Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04819 ATGTCAAAGCTTCAAGTGCACCAACTGAACCAACTAAGAGAGATATTTGGTCGATTTGACATGGATTCGGATGGGAGTTTAACGATGTTGGAGCTAGCAGCGTTTCTGAGGGCTCTGGGGCTGAAGCCTTCGGGGGACCAAGTCCAAGCCATGTTGGGCAACATGGACACAAACGGAAATGGGAAAGTGGAGTTTGAGGAGTTGGTGAGGGTCATTTTGCCTGACATAAACGCAGAGGTTTTGGTGAACCAGGAACAGCTCCTTGGGGTGTTCAAGTGCTTCGATCGTGACGGCAATGGTTTCATATCGGCGGCGGAATTGGCCGGGGCCATGGCGAAAATGGGGCAGCCTCTCACGTACCGAGAGCTCACGGAGATGATCAGAGAGGCTGACACCGATGGCGATGGCGTTATTAGCTTCATAGAGTTTGCCTCCATCATGGCTCGCTCTGCTTCTGATTTTCTTGGCCTCTCCTTCTGCTGA 483 0.5176 MSKLQVHQLNQLREIFGRFDMDSDGSLTMLELAAFLRALGLKPSGDQVQAMLGNMDTNGNGKVEFEELVRVILPDINAEVLVNQEQLLGVFKCFDRDGNGFISAAELAGAMAKMGQPLTYRELTEMIREADTDGDGVISFIEFASIMARSASDFLGLSFC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04819 160 SMART efh_1 11 39 IPR002048 GO:0005509
Spst3g04819 160 SMART efh_1 47 75 IPR002048 GO:0005509
Spst3g04819 160 SMART efh_1 122 150 IPR002048 GO:0005509
Spst3g04819 160 SMART efh_1 86 114 IPR002048 GO:0005509
Spst3g04819 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Spst3g04819 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Spst3g04819 160 Gene3D - 1 80 - -
Spst3g04819 160 SUPERFAMILY EF-hand 4 149 IPR011992 -
Spst3g04819 160 PANTHER CALCIUM BINDING PROTEIN 83 147 - -
Spst3g04819 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Spst3g04819 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Spst3g04819 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Spst3g04819 160 CDD EFh 86 148 IPR002048 GO:0005509
Spst3g04819 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Spst3g04819 160 Gene3D - 81 155 - -
Spst3g04819 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Spst3g04819 160 CDD EFh 11 72 IPR002048 GO:0005509
Spst3g04819 160 FunFam probable calcium-binding protein CML18 78 154 - -
Spst3g04819 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Spst3g04819 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Spst3g04819 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Spst3g04819 160 FunFam Probable calcium-binding protein CML15 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04819 Spst-Chr3 99899169 99899651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04819 8 157 EF-hand Containing Proteins AT1G18530 76.667 3.38e-83 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04819 K13448 - gmx:100795885 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04819 3 99899169 99899651 Spst3g04819 3 99899169 99899651 ECH