Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g04809 | ATGCCTACCGTCAGTGTGGGCCGGGATCGCCTGTTTGCGGCACTAGGAAGAACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTCGGGATCGAGCTCGACGACGTCACGACGGAGAAGGCAATTGTAAGGAAAGAGAAGCATTTGGATGAAGAAGAAGTTGATGAGGACGAAGAAATTATCTACAAAATCGAAGTTCCCGCCAATAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCAGAGTCTTTTGTGAAATCCAGGAGATCCCCTCTTATAGATTATCTGACATTAGTAAGAATGCAATGTTGAAAATGCATGTGAAACCAGAGACTTCTGTGATTCGTCCATTTGTTGTATGTGCTGTTTTAAGAGATGTAACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATATGTCGCCGAAGAACTCTTGTTGCCATTGGAACCCATGATCTGGATAAATTGGAAGGTCCTTTCACCTATGAGGCTTTGCCACCTTCGAGTATAACTTTTACGCCACTAAAGCAGGAAAGGAACTTCAGGGCTGATGAGTTAATGGAGTTTTACAAGTCAGATTTGAAACTGAAGAAATTCTTGCATATAATTGAGGACTCCCCTGTTTTTCCTGTTTTATATGACAGTAAGAGAACTGTATTATCTTTACCCCCGATTATTAATGGTGCACATTCAGCCATCACACTGGAGACAAAGAATGTATTTATTGAATGTACTGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGCACACAAATTTATCATTGAACCAGTTGAAGTGATTTCTTATGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAACATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAGGCAGAAGAGGTCACCAAGTTCTTAAATCGGATGCAATTGCATGCGAAGCAATCTACATCTAATAAAAAGCAGTGTAACTTTGTAGTATATGTACCTCCTACTAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTGGCGATTGCTTATGGATTCAATGCTATTAAGGATAAAGCAGTAGTAGACAATAAGGGCTCAAAGAGGTTGGCTGCTTCCCTGACTCTACTTCCTCTGAACGAGATCAGCGATCTTATCCGGAAAGAGGTTGCATTGATTGGGTTTACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAAAGATGATAAATCTAAAGCAGTTATCATTGGAAACCCCAGATCTTCGGACTTTGAGGCTGTGCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCTATAAAGATTTTTGAAGTGGGTGATATAGCACTTTTGGATGACAATAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCGCTGTACTGTGGTGCTAATGCCGGATTTGAGATAATTCATGGCTTGGTCGACAGAGTAATGGAAAAGAACGGTGTTCCCTTTGTTTCACCTGGCGATAAGTCGGGCTATTACATTGAGCGGTCAGATGAACCCGAGTTTCTTGCTGGTAGACAAGCTAGAATCATTTACAAGGGAAATCATGCTGGCACTTTTGGCATTGTTCATCCCGAGATATTAAACAACTTCGACATTCCCGATCCCTGCTCCTTTGTTGAACTTAACATCGAAAGTTTCCTATGA | 1812 | 0.4111 | MPTVSVGRDRLFAALGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLDEEEVDEDEEIIYKIEVPANRYDLLCLEGLAQALRVFCEIQEIPSYRLSDISKNAMLKMHVKPETSVIRPFVVCAVLRDVTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSITFTPLKQERNFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTAFSEYCAHKFIIEPVEVISYDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKQSTSNKKQCNFVVYVPPTRSDVLHPCDVMEDVAIAYGFNAIKDKAVVDNKGSKRLAASLTLLPLNEISDLIRKEVALIGFTEVLTFILCSKKENFAMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIALLDDNRDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVPFVSPGDKSGYYIERSDEPEFLAGRQARIIYKGNHAGTFGIVHPEILNNFDIPDPCSFVELNIESFL | 603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g04809 | 603 | Gene3D | - | 307 | 382 | - | - | |
| Spst3g04809 | 603 | Pfam | Phenylalanyl tRNA synthetase beta chain CLM domain | 404 | 599 | IPR041616 | - | |
| Spst3g04809 | 603 | SUPERFAMILY | Putative DNA-binding domain | 5 | 95 | IPR009061 | - | |
| Spst3g04809 | 603 | Gene3D | - | 1 | 89 | - | - | |
| Spst3g04809 | 603 | Gene3D | - | 101 | 305 | IPR020825 | - | |
| Spst3g04809 | 603 | Pfam | tRNA synthetase B5 domain | 309 | 379 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Spst3g04809 | 603 | Gene3D | Bira Bifunctional Protein; Domain 2 | 403 | 603 | IPR045864 | - | |
| Spst3g04809 | 603 | SMART | B3_4_2 | 119 | 281 | IPR005146 | GO:0003723|GO:0004826 | |
| Spst3g04809 | 603 | CDD | PheRS_beta_core | 404 | 602 | IPR041616 | - | |
| Spst3g04809 | 603 | FunFam | Phenylalanine--tRNA ligase beta subunit | 1 | 90 | - | - | |
| Spst3g04809 | 603 | PANTHER | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 | 1 | 603 | IPR045060 | GO:0004826|GO:0006432 | |
| Spst3g04809 | 603 | FunFam | Phenylalanyl-tRNA synthetase, beta subunit | 307 | 382 | - | - | |
| Spst3g04809 | 603 | SUPERFAMILY | PheT/TilS domain | 114 | 276 | - | - | |
| Spst3g04809 | 603 | ProSiteProfiles | B5 domain profile. | 304 | 384 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Spst3g04809 | 603 | NCBIfam | phenylalanine--tRNA ligase subunit beta | 1 | 603 | IPR004531 | GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 | |
| Spst3g04809 | 603 | SMART | B5_2 | 306 | 379 | IPR005147 | GO:0000287|GO:0003723|GO:0005524|GO:0006432 | |
| Spst3g04809 | 603 | Pfam | B3/4 domain | 120 | 280 | IPR005146 | GO:0003723|GO:0004826 | |
| Spst3g04809 | 603 | SUPERFAMILY | Class II aaRS and biotin synthetases | 376 | 602 | IPR045864 | - | |
| Spst3g04809 | 603 | FunFam | phenylalanine--tRNA ligase beta subunit | 101 | 305 | - | - | |
| Spst3g04809 | 603 | Pfam | Phe-tRNA synthetase beta subunit B1 domain | 1 | 89 | IPR040659 | - | |
| Spst3g04809 | 603 | FunFam | phenylalanine--tRNA ligase beta subunit | 403 | 603 | - | - | |
| Spst3g04809 | 603 | SUPERFAMILY | Putative DNA-binding domain | 308 | 383 | IPR009061 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g04809 | Spst-Chr3 | 99822322 | 99833649 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst3g04809 | K01890 | - | gmx:100805249 | 1134.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst3g04809 | 3 | 99822322 | 99833649 | Spst3g04809 | 3 | 99822322 | 99833649 | ECH |