Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04761 ATGGCTCGAACACAAACCCAGAGACCCTGTTCAAGCATCCTCGATTCTCTGGGGGAAGAAATCGTGAGAATCATCGCACCCGTTTCAGTATGCATGTTCTTGGTCGTAATATTGGTGTCAATTCTGAACACCGATTCTTCTCTTTTCGACGCATCGATGAGCATGGTCACCATGGCCTACACCGAGACAAACTCGGACTCCACCTGGGACAAATTCCTTGGTGCCCTTTTGAACTCCTTGGCTTTCGTCGTCCTGGTCACCTTCGCAACCTTCATCTTGGTCCTCCTCTTCTACTTCCGATGCACTAGGTTCTTGAAACTCTACATGGCTTTCTCCACTTTCATCGTGCTGGGATTCCTCGGCGGTGAAGTTTCTCTGTTCTTGATCCAACAGTTTAACACTCCCATTGATTGCATTACGTTTTTCCTCTTGCTGTGTAATTTCGCTGTTGTTGGTGTTTTGACCGTGTTTATGTCAAAAATGGCGATTTTTGTGACGCAGGGTTATTTGGTTGTTATTGGAATATTGATTGCTTATTCATTTACTATGCTGCCTGAGTGGACCACCTGGGCCTTGCTTGTTGCCATGGCTTTGTATGACGTTGCTGCAGTTTTGTTACCAATTGGGCCCTTGAGGCTTTTGGTAGAGCTTGCAATATCAAGAGATGAGGAAATTCCCGCATTAGTTTATGAGGCTAGGCCTGTGAACCATGGTAATTTGAATCCTGGGGATCTTGCCCAGAGGCGGCGGTTATGGAGAGAAAGGAGGGTTGAAAATTCAAATCTCCAAACTGATTCCAACTGGAATGCCGACTCAGTGTTGGGTCACGGCCCCAGCGTTGATTCCCCCTCCGATTCTGATGCAAGCCCCAGCAATAACACGAACATAGTTAGAGAAAATGCAGATTTGAGAGCTAATAGTTCTGATGGCTCTTATGGTTGCAGAAATTTGGTGAGTGCAGAAGAGGGACGGATGCGACTTCATGAGACTGATACGGCTCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTCCAGCTTGGTAGGGGGGAAGATGCTGTGCCAAGTGAGAATTTGATGCTAGAGGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGGCTAGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGCTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATCCTTTTGGCTTTATATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAATAGCACTGGGATGTCCTATTGAACCTTATGGAGATGTAGGGGATCTAACCCTGCCCCACCACCACCACCACATAACCGTTGTGCGACCCAAAGACCGGATTGAGGCTTGGAAAGGCGATAAGTTGGCATATGAAGGTGCATGGCATCGAAAGTTCGTTAGTGGTTAG 1452 0.4656 MARTQTQRPCSSILDSLGEEIVRIIAPVSVCMFLVVILVSILNTDSSLFDASMSMVTMAYTETNSDSTWDKFLGALLNSLAFVVLVTFATFILVLLFYFRCTRFLKLYMAFSTFIVLGFLGGEVSLFLIQQFNTPIDCITFFLLLCNFAVVGVLTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGNLNPGDLAQRRRLWRERRVENSNLQTDSNWNADSVLGHGPSVDSPSDSDASPSNNTNIVRENADLRANSSDGSYGCRNLVSAEEGRMRLHETDTALSAPLIDRGMNVQLGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIALGCPIEPYGDVGDLTLPHHHHHITVVRPKDRIEAWKGDKLAYEGAWHRKFVSG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04761 483 Pfam Presenilin 18 433 IPR001108 GO:0004190|GO:0016020|GO:0016485
Spst3g04761 483 SMART psh_8 73 445 IPR006639 GO:0004190|GO:0016020
Spst3g04761 483 MobiDBLite consensus disorder prediction 263 294 - -
Spst3g04761 483 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016020|GO:0016485
Spst3g04761 483 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016020|GO:0016485
Spst3g04761 483 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016020|GO:0016485
Spst3g04761 483 PANTHER PRESENILIN 8 432 IPR001108 GO:0004190|GO:0016020|GO:0016485
Spst3g04761 483 Gene3D Presenilin 365 436 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04761 Spst-Chr3 99360188 99364930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04761 5 432 Miscellaneous Gene Families AT2G29900 58.042 1.30e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04761 K04505 - gmx:100780823 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04761 3 99360188 99364930 Spst3g04761 3 99360188 99364930 ECH