Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04744 ATGGTGAAGATATGTGGAATTGGAGCTGGGTACGTAGGGGGTCCTACAATGGCTGTGATTGCCCTGAAATGTCCCTCAATTGAAGTGGCTGTGGTTGACATCTCTCACTCTCGCATATCAGCTTGGAATAGCAAGAAACTCCCTATTTATGAGCCTGGCCTAGAAGAAGTGGTGAATCAGTGTAGAGGAAAGAACCTCCTCTTCAGTACCGATGTGGAAAAGCACGTCTATGAGGCAGACATAATCTTTGTTTCAGTAAACACCCCCACAAAAATCAGAGGACTTGGAGCTGGCAAGGCTGCAGACTTGACTTACTGGGAAAGTGCAGCTAGGATGATAGCTGATGTTTCCAACTCAAACAAGATTGTTATTGAGAAATCCACTGTCCCAGTGAGAACAGCTGAGGCAATTGAGAAAATTTTAACTCACAATACTAATAGCAAGGGCATCAAGTACCAAATTCTGTCAAATCCTGAGTTTCTCTCTGAGGGAACAGCCATTCAGGACCTTCTAAACCCTGACCGGGTTCTGATTGGAGGGAACCAAGACCCTGAAGGTTTAGAAGCAATCCAAAAATTGAAGGCCATATATGCTCATTGGGTTCCTGAAGACAGAATCATAACGACTAATTTGTGGTCAGCAGAACTGTCCAAGTTAGCTGACAATGCCTTTTTGGCCCAAAGGATTTCATCTATCAATGCTATGTCTGCCTTATGTGAGACCACTGGGGCTGAAGTCTCACAAGTTTCTCTTGCTCTCAGCAAAAACACCAAAATTGGACCCAAGTTCCTTAATGCTAGTGTTGGTTTTGGTGGCTCTTGCTTTCAAAAGGACATACTCAACTTGGTGTACATATGTGAGAGCAATGGCCTCACTGAAGTGGCTAATTACTGGAAAGAAGTGATCAAGGTGAATGACTACCAAAAGAGTCGGTTTGTGCACAGGGTTGTGACCTCAATGTTCAACACAGTCTCAGGTAAGAAGATTGCAATTCTGGGTTTTGCCTTCAAGAAGGACACTAGTGACACAAGGAAAACTCCTGCAATTGACGTTTGCAAAGGCCTTTTGGGAGATAACGCGTGCTTGAGCATCTATGATCCACGTGTTACTGAGGAGCAGATTCAAAAGGACTTGTCAATGGGTGATGTTGAATGGGACCATCCAATCCACCTGCAAGCAGTGAGTTCCACTGTTGTGAAACAGGTTAATGTTGTTGGAGATCCTTATGAGGCAACCAGAGATGCTCATGGAATATGCATTCTTACAGAGTGGGATGAGTTCAAGACAATTGACTATGAAAGAGTGTATGACAAGATGGAGAAACCAGCATTTGTGTTTGATGGTAGAAACATGTTGAATGTTGACAAGTTGAGGGAGATTGGATTCATTGTTTACTCAATTGGGAGACCTTTAGACCAATGGCTGAAGAACATGCAGATTATGAATTGA 1449 0.4341 MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSKKLPIYEPGLEEVVNQCRGKNLLFSTDVEKHVYEADIIFVSVNTPTKIRGLGAGKAADLTYWESAARMIADVSNSNKIVIEKSTVPVRTAEAIEKILTHNTNSKGIKYQILSNPEFLSEGTAIQDLLNPDRVLIGGNQDPEGLEAIQKLKAIYAHWVPEDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCETTGAEVSQVSLALSKNTKIGPKFLNASVGFGGSCFQKDILNLVYICESNGLTEVANYWKEVIKVNDYQKSRFVHRVVTSMFNTVSGKKIAILGFAFKKDTSDTRKTPAIDVCKGLLGDNACLSIYDPRVTEEQIQKDLSMGDVEWDHPIHLQAVSSTVVKQVNVVGDPYEATRDAHGICILTEWDEFKTIDYERVYDKMEKPAFVFDGRNMLNVDKLREIGFIVYSIGRPLDQWLKNMQIMN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04744 482 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Spst3g04744 482 FunFam UDP-glucose 6-dehydrogenase 243 480 - -
Spst3g04744 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Spst3g04744 482 FunFam UDP-glucose 6-dehydrogenase 1 210 - -
Spst3g04744 482 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Spst3g04744 482 NCBIfam nucleotide sugar dehydrogenase 3 450 IPR017476 GO:0016616
Spst3g04744 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 453 IPR014027 GO:0016616|GO:0051287
Spst3g04744 482 Gene3D - 1 210 - -
Spst3g04744 482 PIRSF UDPglc_GDPman_dh 2 469 IPR017476 GO:0016616
Spst3g04744 482 SMART UDPG_MGDP_dh_C_a_2_a 330 454 IPR014027 GO:0016616|GO:0051287
Spst3g04744 482 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 188 IPR001732 GO:0016616|GO:0051287
Spst3g04744 482 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 317 465 IPR036220 -
Spst3g04744 482 Gene3D - 243 481 - -
Spst3g04744 482 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 473 IPR028356 GO:0003979
Spst3g04744 482 Gene3D - 211 242 - -
Spst3g04744 482 FunFam UDP-glucose 6-dehydrogenase 211 242 - -
Spst3g04744 482 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04744 Spst-Chr3 99190534 99191982 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04744 K00012 - gmx:100781197 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04744 3 99190534 99191982 Spst3g04744 3 99190534 99191982 ECH