Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04701 ATGGCAGCGACACCAGCAGCTACTTTCACTATTGGATCCACCGGTTCCCTTGGCCAAAGAGGAAGCTCTCTTCCTCAATCAAGGTCTTTTGGGTTGAAATTCAACGCCCAGAATCCTTTGAAGAGTTTCTGTGGCCTTAAGGCTATGTCATCTGTGAGGTGTGAGTCAGAATTATCGTTCTTGGGTCACAAAAGTGTTTCTGCTCTGCGGGCATCTTTTGCATCCAAGGCTCGGAAGGAAAACAGCCAGAACTTCAACTACCAGTTGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAACCCCTCGCGCTTCTCATCAAGATGTCCCCTTTAGTTTCCGATCTGCATCTCTATGATATTGCAAATGTCAAGGGAGTCGCTGCTGATATCAGTCACTGTAACACACCCTCCCAAGTCAGGGATTTCACTGGAGCTTCTGAGTTGGCAAATTGTTTGAAGGGTGTGGATGTTGTTGTCATTCCCGCCGGTGTTCCAAGGAAGCCCGGCATGACCCGCGATGACCTTTTCAACATCAATGCTGGCATAGTCAGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCTGGTGCTTTTATTCAAATTATCAGTAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGACACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTCAGGGCAAACACGTTTGTTGCCCAGAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAGGTTGAGGAGTTGACGGTCAGGATTCAAAACGCTGGAACTGAAGTTGTGGAGGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCAATGGCATATGCAGCTGCTAGATTTGTTGAATCGTCTCTTCGTGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGCAATCAGATTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGTATCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTACGAGCAGAAGGCTTTGGAAGCTCTTAAGCCAGAACTCAAGGCTAGCATAGATAAGGGCATTGCTTTTGCTCAGAAGCAACCTGTTGCTGCTTAG 1242 0.4791 MAATPAATFTIGSTGSLGQRGSSLPQSRSFGLKFNAQNPLKSFCGLKAMSSVRCESELSFLGHKSVSALRASFASKARKENSQNFNYQLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIQIISNPVNSTVPIAAEVLTQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGRKGIEALIPSDLQGLTDYEQKALEALKPELKASIDKGIAFAQKQPVAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04701 413 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Spst3g04701 413 FunFam Malate dehydrogenase 93 239 - -
Spst3g04701 413 Gene3D - 93 239 - -
Spst3g04701 413 PANTHER MALATE AND LACTATE DEHYDROGENASE 79 409 - -
Spst3g04701 413 SUPERFAMILY LDH C-terminal domain-like 239 406 IPR015955 GO:0003824|GO:0016616
Spst3g04701 413 CDD MDH_glyoxysomal_mitochondrial 95 406 IPR010097 GO:0006099|GO:0030060
Spst3g04701 413 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
Spst3g04701 413 NCBIfam malate dehydrogenase 96 407 IPR010097 GO:0006099|GO:0030060
Spst3g04701 413 Gene3D - 240 410 IPR015955 GO:0003824|GO:0016616
Spst3g04701 413 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
Spst3g04701 413 FunFam Malate dehydrogenase 240 408 - -
Spst3g04701 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 239 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04701 Spst-Chr3 98802625 98803866 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04701 K00026 - gmx:100783173 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04701 3 98802625 98803866 Spst3g04701 3 98802625 98803866 ECH