Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04642 ATGCTTTGCGAAAGGGAAACTAAATCATCAACCACATTGCAATGCCAACAAAACCAAGAACGACGTCGTCAGCAACCTGAAAGCGATTGTCCTCAGGCGCCAAAACCAGACATGAAAAGAGGGAGAGTAAGAAAGTTGGACACTCTTCTCACATTCACCCGACAACGATCCATTCAGATTCTCATCGTTCTTGCGCTCTTCTACGCCTTCTTCGTCACCCTCGAAATCCCCTTCCTTTTCAGAAACGCTCAACAACTACCCTCTCGCCTCCCGCGGCTAGTTCGCCGCCCAAACGGCGTTGTCTCTGGTTTGATCCTGAATGACGCCGCATTCGATTCCAGTCTCTACCAATCCGCCTGCAGCGTCGGCAAGGCTGTTTGGGCCCAACTTAAATCAGGCAACCCGCCGGCTCCCGTTTCCAAGCCCGATAACCGATCCGAGCTGTGCCCCGGATCTATATCAATATCCGGGCCAGAGTTTTTGATCCGCGGGAGTTTGATGGTGATTCCCTGTGGACTCACGTTGGGGTCCCATGTAACGGTGGTTGGGGAGCCGTCAAGGGCTCAGGGGAGAAGGTGTCAGTTTGTGATGGAGTTGCAGGGGCTGAAGACGGTGGAGGGTGAAGAACCACCAAAGGTGTTGCATTTCAATCCTAGATTGAGAGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCAATGCGTTGTGATGGTTGGAAATCCAGAGCTGATGAAGATACTGTTGATGGGTTGGTGAAGTGCGAGAAGTGGATTGGGGGCGATGATCATGACAGGCAAGCAGTGGAGACCAAGGCAGAGTGGTGGTTGAAGAGACTGATAGGTCGGACAAAACGAGTAACATTTGATTGGCCATTTCCATTTTCTGAGAACAAGCTATTTGTTCTTACTCTCAGTGCTGGGTTGGAGGGTTACCATGTTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGCTTTACTCTTGAGGATGCTACTGGTCTTACTTTGAGCGGGGACATTGATGTCCATTCTGTATTTGCTGCTTCTTTGCCTTCGGTGCATCCCAACGTTTCCCCGCGGCAGCATCTTGAATATTCGACTAGATGGCGTGCCCCAAATCTTCCTTACTCTGGTGTGGAATTGTTCGTAGGGATCCTTTCCGCCGGAAACCATTTTGCTGAGCGGATGTCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAATCTTCGAAAGTAGTGGCTCGCTTCTTTGTAGCACTGCACCCGAGGAAGGAACTTAACGTGGAGTTGATGAAAGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAGGGAGACGATGACACTTTTGTAAAAGTTGATGATATTATGACTCAAGCAAGGAATGTTCCATATTCTATGAGCTATTATATTGGGAACATTAATTACCACCACAAACCCTTGCGCCGTGGTAAATGGGCCGTGACATATGAGGAGTGGCCAGAAGAGGAATACCCACCTTATGCTAATGGACCGGGTTATATTTTGTCTTCTGATATTGCAACCTACATTTTATCTGAATTTGAGGCCCACAAATTAAGGTTGTTTAAAATGGAAGATGTGAGTATGGGAATGTGGGTAGAACAATTTAACAGAACGAAACCAGTATACTATTTGCATAGCTTCAAGTTCTGCCAGTATGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTAGAGGAGGAACCATCTTTGAATTCAGAGAGGAGGAACGAAGAAAACAAGTTTTGCAGTCATAGCTTAGACTCAACATTGTTACTCGATTTTCTCTTCTACCCTTTCTTTTTGTTTCAGCAGAATGGATTGGAAGATCTTGGTGAGGTGGAAGCTGTGGCTTTTTCTTCCCTCAAGTACGACTTCACCACGCTACTGATAGTGACTGCAGTTTTGTCTACTTCACGTCTTCGACCCTTACCAGCTAAGGAAAACTGCACAACCAAGTTTCCTTTCAATCAAAGTCATCATAACCCAAAAAGATCTGTCCCCATTCTCCACTGGCAACTTGATCAAAATCAACTCCAAGAGAAGAGCACCATGAAGATGACCGAGATGTGGACAACAATGGGGTCAACCTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGTTTCTTTGAGAAGTACACACATAGGATCATGAGCTACTTCTCCCCTTACATTAGAATCTCCTTCCATGAGTACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCAGCTGTGGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAAATGGGTAAGGATAGCAGCAACTTGGTGTTGACTATGGATGAGTATGAAAGAGTGACGGATGACTATGAGGGTGTCAAAATCTGGTGGGTCTCTAGCAAAGTTATATCAACAACAAGGTCCCCAATGTCTTATTATCCAGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGAGACTTAATAACTGAGTCATATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTACAAGTGGCCAAGTTACAAGCAAACCATGTGGAGCCACATTGTGTTTGAGCACCCTGCTACTTTTGAAACAATGGCCTTGGAGCCAGAGAAGAAAAAGGAGATCATTGAGGATTTGGTCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAGAGGGGGTACCTTCTTTATGGCCCTCCTGGGACAGGAAAATCCACTATGATTGCTGCAATGGCCAATTTGTTAGCCTATGATGTTTATGACTTGGAGCTCACCGCAGTGAAGGACAACACAGAGCTGAGGAAGCTTCTGATTGAAACAACCAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAAAAAGAAGGCAGATAAGTTGTCGGACGACGAGACGGATAAGGATGTTGTTGGAAGGAAAGAGGCCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTGACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACCAATCATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAGCACATTCAGCTCTCCTATTGCACGTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTGAAGCTTGAAACTCATCCTTTGTTTGAGACTATCAAGAGGCTAATAGGAGAAGTCAACATCACTCCAGCTGATGTTGCTGAAAACCTCATGCCTAAGTCCCCACTGGATGATCCTCACAAGTGTCTCTCAGACTTGATTGAAGCACTTGAGGAAGCTGCAAAAGCTGAGGAACTGAAGCAGAGTTGTCCCATTGAACATGAGGAACTTCCTCAACAAAATGGATCCATCAAGGAAAATGGTGAGCTTTCAGGTGACAAAACAATTGACCAAACAATGAATCAATGCCAGCTATGGCTGGCTAATGATACATAG 3765 0.4576 MLCERETKSSTTLQCQQNQERRRQQPESDCPQAPKPDMKRGRVRKLDTLLTFTRQRSIQILIVLALFYAFFVTLEIPFLFRNAQQLPSRLPRLVRRPNGVVSGLILNDAAFDSSLYQSACSVGKAVWAQLKSGNPPAPVSKPDNRSELCPGSISISGPEFLIRGSLMVIPCGLTLGSHVTVVGEPSRAQGRRCQFVMELQGLKTVEGEEPPKVLHFNPRLRGDWSGKPVIELNTCYRMHWGTAMRCDGWKSRADEDTVDGLVKCEKWIGGDDHDRQAVETKAEWWLKRLIGRTKRVTFDWPFPFSENKLFVLTLSAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSPRQHLEYSTRWRAPNLPYSGVELFVGILSAGNHFAERMSVRKSWMQHSFIKSSKVVARFFVALHPRKELNVELMKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDDIMTQARNVPYSMSYYIGNINYHHKPLRRGKWAVTYEEWPEEEYPPYANGPGYILSSDIATYILSEFEAHKLRLFKMEDVSMGMWVEQFNRTKPVYYLHSFKFCQYGCVEGYYTAHYQSPRQMMCLEEEPSLNSERRNEENKFCSHSLDSTLLLDFLFYPFFLFQQNGLEDLGEVEAVAFSSLKYDFTTLLIVTAVLSTSRLRPLPAKENCTTKFPFNQSHHNPKRSVPILHWQLDQNQLQEKSTMKMTEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFFEKYTHRIMSYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDDYEGVKIWWVSSKVISTTRSPMSYYPEQEKRFYKLTFHNKYRDLITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDDETDKDVVGRKEAKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNHVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFETIKRLIGEVNITPADVAENLMPKSPLDDPHKCLSDLIEALEEAAKAEELKQSCPIEHEELPQQNGSIKENGELSGDKTIDQTMNQCQLWLANDT 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04642 1254 FunFam Hydroxyproline O-galactosyltransferase 385 627 - -
Spst3g04642 1254 Coils Coil 1190 1210 - -
Spst3g04642 1254 Gene3D - 166 359 - -
Spst3g04642 1254 Pfam Galactosyltransferase 407 586 IPR002659 GO:0006486|GO:0016020|GO:0016758
Spst3g04642 1254 MobiDBLite consensus disorder prediction 1 39 - -
Spst3g04642 1254 PANTHER BCS1 AAA-TYPE ATPASE 752 1208 - -
Spst3g04642 1254 FunFam Hydroxyproline O-galactosyltransferase GALT6 165 258 - -
Spst3g04642 1254 CDD GLECT 169 359 IPR001079 GO:0030246
Spst3g04642 1254 Pfam Galactoside-binding lectin 166 359 IPR001079 GO:0030246
Spst3g04642 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 1202 IPR027417 -
Spst3g04642 1254 SMART Gal_bind_lectin_2 169 360 IPR001079 GO:0030246
Spst3g04642 1254 ProSitePatterns AAA-protein family signature. 1107 1126 IPR003960 GO:0005524|GO:0016887
Spst3g04642 1254 Gene3D - 1133 1200 - -
Spst3g04642 1254 Pfam Domain associated at C-terminal with AAA 772 864 IPR025753 -
Spst3g04642 1254 FunFam AAA-ATPase ASD, mitochondrial 940 1133 - -
Spst3g04642 1254 FunFam Hydroxyproline O-galactosyltransferase GALT2 275 359 - -
Spst3g04642 1254 MobiDBLite consensus disorder prediction 22 39 - -
Spst3g04642 1254 Pfam ATPase family associated with various cellular activities (AAA) 989 1136 IPR003959 GO:0005524|GO:0016887
Spst3g04642 1254 CDD RecA-like_BCS1 963 1133 - -
Spst3g04642 1254 Gene3D - 386 637 - -
Spst3g04642 1254 SMART AAA_5 984 1139 IPR003593 GO:0016887
Spst3g04642 1254 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g04642 1254 SUPERFAMILY Concanavalin A-like lectins/glucanases 167 359 IPR013320 -
Spst3g04642 1254 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 165 361 IPR001079 GO:0030246
Spst3g04642 1254 Gene3D - 944 1132 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04642 Spst-Chr3 98193462 98209596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04642 35 624 Glycosyltransferase AT1G74800 58.384 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04642 K20843 - gmx:100800292 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04642 3 98193462 98209596 Spst3g04642 3 98193462 98209596 ECH