Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04624 ATGGTTTCCGATTCAATCTCCGCCGTGCCGATTCCCTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCCGCAAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAACAATGGCTTTCGCAAGGTGCGGTGAAGAGCAAGGGATGCAAGGACGGTGTGGACGACGACGTCGTCCACGCGCCGCCGCCGCCAGTGAATCACGGCAAGCACTCGTTGGAGCCGCTGAACACCAGGCGCGGAGGCGAAGAGGACGACGGATTGATTCATCACGATAGCGATTCAGAGTCTCCGACCAATTGTCCCGCCGGCGTATTGTGCGGCAACGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGGAGCAGCAGTAGCAGCAGTTCCAGCAGCGGCGGGTGCTGTTCGGGGAACATTACCGAGGAGGAGGAGGAGGAGGAAGGCGAGGACGATGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAAACCCTTGTTCTGATTCTCCCCCTGTGGTTTCGCCTTGTGAAGGGTCCAGTATAGGGTCTCCGAATTCAAAACCCGAGAGTGGTAGATTGGTTCCTTGGGGCACTGGTAATAGCCGAGCGTGGAGGGCAGATGACGCTTTTCGCCCTCAGAGTTTACCCAATTTGTCTAAACAACACAGTATGCCGAACCCTGATCGCCGTTGCGTAGGAGGGGTCCCTTGGGGTCGTCTTCCCACGCCGTCCTCCTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAGTTTCTTGCCATGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATCCTGGAGGAGGATGGTCGTTGTCCCGGGTGTAGGAAGCCTTATGAGTGCGACCCTGTTGAGACAGAAGCGAGCGTCCATGGAGGCAGCCTCACTCTTCGTTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTGA 1011 0.5648 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGCKDGVDDDVVHAPPPPVNHGKHSLEPLNTRRGGEEDDGLIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNITEEEEEEEGEDDDDGCLDDWEAMADALAADDKHENPCSDSPPVVSPCEGSSIGSPNSKPESGRLVPWGTGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWGRLPTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPVETEASVHGGSLTLRLARSCSMIERS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04624 336 MobiDBLite consensus disorder prediction 175 209 - -
Spst3g04624 336 Pfam RING/Ubox like zinc-binding domain 261 307 - -
Spst3g04624 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 318 IPR013083 -
Spst3g04624 336 MobiDBLite consensus disorder prediction 1 162 - -
Spst3g04624 336 MobiDBLite consensus disorder prediction 144 162 - -
Spst3g04624 336 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 257 333 IPR039780 GO:0004842|GO:0030014
Spst3g04624 336 ProSiteProfiles Zinc finger RING-type profile. 261 303 IPR001841 -
Spst3g04624 336 MobiDBLite consensus disorder prediction 188 202 - -
Spst3g04624 336 CDD mRING-HC-C4C4_CNOT4 260 304 IPR039515 -
Spst3g04624 336 SUPERFAMILY RING/U-box 257 312 - -
Spst3g04624 336 MobiDBLite consensus disorder prediction 78 98 - -
Spst3g04624 336 FunFam RING/U-box superfamily protein 254 319 - -
Spst3g04624 336 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04624 Spst-Chr3 97997806 97999003 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04624 - - gmx:100792365 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04624 3 97997806 97999003 Spst3g04624 3 97997806 97999003 ECH