Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04603 ATGAAAGTTAAGATCATATTAGCCTGCATGAATTTTGTGATGTGCATAATGGTAAAGGTTGTAATGTTCCGTTTGCTTCCACTGTCTTCCTTAGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCCTGGCCTTCTCTTTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTAGCATTCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGCCTGGTGCCTGTAACTTCTGAGCAAGGAGAGGAATTGCGTAAACTGGTAGGAGCTACATATTATATTGAGTGCAGCTCAAAAACTCAGCAGAACGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCAAGCCTCCACATAAACAAGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTTCTGTCAGTACACTTTTTTCATATCATAACAACTCCTGCACGTGAAACTGTCTTACTTGAGGATAGATCATTAAGTGTTGATTACTGCTATCACAATCAAAATTATCCATACATGTAG 609 0.4253 MKVKIILACMNFVMCIMVKVVMFRLLPLSSLGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPSIPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPHKQEKKKKPRRGCLLSVHFFHIITTPARETVLLEDRSLSVDYCYHNQNYPYM 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04603 202 ProSiteProfiles small GTPase Rab1 family profile. 1 193 - -
Spst3g04603 202 Pfam Ras family 32 146 IPR001806 GO:0003924|GO:0005525
Spst3g04603 202 Gene3D - 14 166 IPR027417 -
Spst3g04603 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 146 IPR027417 -
Spst3g04603 202 PANTHER RHO FAMILY GTPASE 11 164 IPR003578 GO:0005525|GO:0007264
Spst3g04603 202 PRINTS Transforming protein P21 ras signature 124 146 - -
Spst3g04603 202 PRINTS Transforming protein P21 ras signature 16 38 - -
Spst3g04603 202 PRINTS Transforming protein P21 ras signature 78 91 - -
Spst3g04603 202 ProSiteProfiles small GTPase Ras family profile. 1 183 IPR001806 GO:0003924|GO:0005525
Spst3g04603 202 SMART rab_sub_5 23 149 - -
Spst3g04603 202 SMART rho_sub_3 7 149 IPR001806 GO:0003924|GO:0005525
Spst3g04603 202 ProSiteProfiles small GTPase Rho family profile. 1 146 - -
Spst3g04603 202 NCBIfam small GTP-binding protein domain 32 140 IPR005225 GO:0005525
Spst3g04603 202 SMART ras_sub_4 10 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04603 Spst-Chr3 97819509 97827388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04603 47 184 EF-hand Containing Proteins AT5G27540 26.761 8.41e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04603 K04392 - gmx:100791566 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04603 3 97819509 97827388 Spst3g04603 3 97819509 97827388 ECH
Spst3g04603 3 97819509 97827388 Spst9g02248 9 52290700 52295038 PCT