Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04593 ATGGGGACGACGACAACACCCCATTCGCACACCGTTAGCGTCTTCAACATACCTCGATCCGTCACCGCCAAGGACCTCCTCTACTTTCTTGAATCCAAGGTGGGTCCTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACACCAACTGGAAGTCCCGCGGCGCTGGCCGCGTCCAGTTCGAGACCCTCGACGCCAAGACTCACGCCCTCTCTCTCTCCCACCTCCAACAACTCCTCTTCCACTCCCACTTCCTACGCCTCTCCGATACCTCCAACGACATCATCTTCCGCCCCCTCCATCGCCTCCAGAACGGCGTCCTCTACGCCGGCTTCATGCTCTCCGATCACCGAATGAGCGTCCTCGAATCCTGGGAGGGTGTCGCAGGCTGGGTCGTGCCCCAAAGTAGGAACCTTGACTTCTTGGTGTGGCATAATGACGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGACAAGCAGCCAAACTCAATGCGCTCCTTTTGAAGCTGAAATTTGGGCCACGGATTTATAAGAAAAAGACGGGACCAAATGTGGCAACCAAGTTTAGGAGTGATAGGTACCATTTTTGTAAAGAAGATTCTGAGTTTCTTTGGGTGCGGACTGCTGACTTTTCGCCTCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGAGGAAGAACATTTGGCTTCGGATGTTTTTACAAGTTTCCCGCTCTACAAGGAAAATTTAAGAGATTTGGCTCTGGAGGATGGGGAAGAATTATGTTCTTCCACGGAAGCAGTTCCTCTTGTAAAGTGTGCGTCGCAATCCAAGTTACCTTATGAGGCGCTTTTCCAGCTGAATTCTCTTGTTCATACTCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTGGGAGGCTTAGATGAAGAAACTAGAGCTGTGATTTTTCAGAAATTGCATCAGATGGGCTTCACTTGTTATGACCCTCTCAAATTTGTGAAGACTCAGTTGCATGTGCTGAGTAACAAGAAAAAAAGTCCACCACAATCTTCGCAGAAAAGGTTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAGATTTATTGCCTTGGCCCTGAGCTTGAAACGTCAAACCATGTGGTAAAGCACTTTGCATCATATGCTTCAGACTTCATGAGGATCACCTTTGTTGAAGAGAATTGGACTAAGCTTACAGACTATGCAATAGCAACTGGTGTGCAGAAGGGAACCTTTTCAAAGCCTTTCAAAACTGAAATATATCATCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACCATGTGAAAGCAGCAGATATCAGACAATGGATGGGATCCTTCAACAATATTCGCAGTGTTTCTAAATGTGCTGCTAGGATGGGTCAGTTGTTCAGTTCCTCCATACAAACTTTTGAAGTGTCCCCTCAAGATGTGGAGATAATTCCAGATATTGAAGTTACCTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGGAAAATTTCCCAATCTTTTGCTAGGAAAGTTGCTCAAAAGCTTAAGTTGGATCATAGTCCATCAGCATTTCAAATTAGGTTTGGAGGATATAAAGGTGTCATTGCTGTTGATCGACATTCCTTTAGGAAGTTATCATTGCGTAACAGCATGCTTAAATTTGAATCCAAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGCCTTTTTGGCAAGGCAACAGGACCAATTGCGTTTGTTAGGAAGGATGTTGAGTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAACAGAGCTGATTCAAGAAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAACCAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTATTCCCAAGGGTCGAGTCTTAGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCTGTATAACGGTGAAAAAAACTATGGAAAAGTTTGATGACAACTTAAGGAAAGTGGATGGCGATGATAGCACACGGATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGCCTTCACCCAGGGGACGTCAGAGTCCTTGATGCTATCTACAAGGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTAGTATTTCCACAAAACGGACATAGACCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATTAGCTGGGACAAAGATCTAATCCCATGTCAAACTGAGGCTCCAATGGACTACACTGGAAGGAGACCTCGCATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTTGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCACATCTAGTTCATGCTGACCGGGAACAAGAGAAGGCCAGGAGTAGAAAATGTCTGGAGTTGGCAGAACTTCACTCCATGGCTGTTGATTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAAAGTTTTGAAACCAAAAGAGTTTCCAGATTTCATGGAGAGGGTAGACAAGCCTATGTACATCTCCAATGGGGTACTAGGAAAACTTTATCGTGCCATAATGGAGTCTCAACTACAAATAAAATATAGTTTTGTGTGGTCAGAGAAGCTTGCTGAAGAAGCATATGATCGTAGCTTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTACGCACGGAAGATGAGCAGTTTGATGAACTTCTATGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGCGATAACAGGAGGTATGGTGATATGAAAGATCGAATTCTGCTCTCAGTGAAGAATATTCAGCTTGAAGCTAAAGAATGGTTTGAAACTAGTTGCCTACCGCACGACTATCGGCCTATGGCGACTGCATGGTATCATGTGACCTATCACCCCAGTTACTATTGTCAGGAAAGTCCATGTTTTCTAAGCTTCCCATGGATAGTTGGTGACATTTTGTTGCAAATAAAGTCTGTAAACAAAGTACTTCACAGATGA 3360 0.4351 MGTTTTPHSHTVSVFNIPRSVTAKDLLYFLESKVGPSTVFALEIFSDNTNWKSRGAGRVQFETLDAKTHALSLSHLQQLLFHSHFLRLSDTSNDIIFRPLHRLQNGVLYAGFMLSDHRMSVLESWEGVAGWVVPQSRNLDFLVWHNDDCYRLEIFFEDILESHGYCLGQAAKLNALLLKLKFGPRIYKKKTGPNVATKFRSDRYHFCKEDSEFLWVRTADFSPLKSIGHSTSFCWEIEEEHLASDVFTSFPLYKENLRDLALEDGEELCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEETRAVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKKSPPQSSQKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVEENWTKLTDYAIATGVQKGTFSKPFKTEIYHRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDHVKAADIRQWMGSFNNIRSVSKCAARMGQLFSSSIQTFEVSPQDVEIIPDIEVTSDGVSYCFSDGIGKISQSFARKVAQKLKLDHSPSAFQIRFGGYKGVIAVDRHSFRKLSLRNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEAFLARQQDQLRLLGRMLSDSKAALDVLESLNRADSRSILVKMLHEFNEPTSEPYLSMMLKAYYAYQLSDLKSRCRIFIPKGRVLVGCLDETGLLNYGQVFVCITVKKTMEKFDDNLRKVDGDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYKEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQEKARSRKCLELAELHSMAVDFAKTGAPAAMPKVLKPKEFPDFMERVDKPMYISNGVLGKLYRAIMESQLQIKYSFVWSEKLAEEAYDRSFEVNGFEAFLETASSHKEMYARKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNIQLEAKEWFETSCLPHDYRPMATAWYHVTYHPSYYCQESPCFLSFPWIVGDILLQIKSVNKVLHR 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04593 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Spst3g04593 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1111 IPR007855 GO:0003968
Spst3g04593 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Spst3g04593 1119 SUPERFAMILY RNA-binding domain, RBD 6 90 IPR035979 GO:0003676
Spst3g04593 1119 Gene3D - 2 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04593 Spst-Chr3 97732843 97737037 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04593 K11699 - gmx:100808274 1963.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04593 3 97732843 97737037 Spst3g04593 3 97732843 97737037 ECH