Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04535 ATGCCATCAACAGGGAGGGATCAGAGGATTGTTCGCAGCATGGCAAGCCTTCGTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGGGGATGGTATAGGCTTTATAGGAAGAGGAAGAGGAAGAAGACATCAACATACAAATATTCCTTCGCAGCCTCAAGAACACGTTTCACAACCACATGATCAAGTCGTGGTTCGAGAGGAATGGAGTTTTCTAGAGAGTTTTGAGAAGCAATATGGCACCAAACACCCTTTCTTTTATGCTTGCCGTTTCGGGGAAGCAATGAAGTTAGCAGAACAAGATCACAAGTTCTTGTTCATGTACCTCCACTCACCTGACCACCCTTTCGCAAACTTTTTCTGCAAGGAAACACTGTGTTCGGAACCAGTGATTCAGTTTCTTGACGTGAATTTTGTTTGCTGGGGAGGACTCACATATAGAGGAGAGGGCTTGCAAATGGTTGCAACACTTAGCCCTGACACCTTTCCCTGTTGTGCTGTCATAGCCCCTGCTCCCGGTGAGAGCATAGCAGTTCTGCAACAGCTAGAAGGACCCCTTTCACCTGCTGAACTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGAATGGCTTTTGGAAGTGCTAAAGCTAAGCAGGAAGAAAAGATTGAAGCAGATCGTAGGCTTAGAGAAGAACAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACTCAATAATTTACCTTCAGGAGAGGGAGTTCAGAAGCAAGTGGAAGCTCACAATACCAAAAATTATGGTAAACTGGTGAACAATTCTATTAAGTTCACCAAACAGAACAATAGAGTGAATGAGTCCACTAAGGGAGTTGCAAGTAAAGGAAGCGAGTCTCAGCCCACACAGATACTCGTAAGGTTTCCGAACGGGGAAAGAAGAGAGCATACTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATTGATTCATTAGGTTTGCCAGGAATCGGAAAATACAGATTGATATCAAACTTTCCAAGAAGAGCTTATGGTGTTGACCAAATTGGAATGACTCTCAAAGAGGCTGCCTTGTATCCTAAAGCTAGTGTATTCCTGGAGCCTTTAGGAACAAGAGCCACATAA 1146 0.4354 MPSTGRDQRIVRSMASLRRSIMEGISRAMGDGIGFIGRGRGRRHQHTNIPSQPQEHVSQPHDQVVVREEWSFLESFEKQYGTKHPFFYACRFGEAMKLAEQDHKFLFMYLHSPDHPFANFFCKETLCSEPVIQFLDVNFVCWGGLTYRGEGLQMVATLSPDTFPCCAVIAPAPGESIAVLQQLEGPLSPAELVGILQRTLEEQGMAFGSAKAKQEEKIEADRRLREEQDAAYLAALQIDKEKDKLNNLPSGEGVQKQVEAHNTKNYGKLVNNSIKFTKQNNRVNESTKGVASKGSESQPTQILVRFPNGERREHTFLCTDKIQSIFSYIDSLGLPGIGKYRLISNFPRRAYGVDQIGMTLKEAALYPKASVFLEPLGTRAT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04535 381 CDD UAS 92 202 - -
Spst3g04535 381 Pfam UBX domain 296 374 IPR001012 GO:0005515
Spst3g04535 381 MobiDBLite consensus disorder prediction 41 60 - -
Spst3g04535 381 SUPERFAMILY Ubiquitin-like 293 376 IPR029071 -
Spst3g04535 381 Coils Coil 210 230 - -
Spst3g04535 381 SMART ubx_3 292 375 IPR001012 GO:0005515
Spst3g04535 381 Gene3D Glutaredoxin 57 206 - -
Spst3g04535 381 Gene3D - 294 375 - -
Spst3g04535 381 SMART 45neu3 71 197 IPR006577 -
Spst3g04535 381 CDD UBX 302 374 - -
Spst3g04535 381 ProSiteProfiles UBX domain profile. 295 373 IPR001012 GO:0005515
Spst3g04535 381 PANTHER FAS-ASSOCIATED PROTEIN 8 374 - -
Spst3g04535 381 SUPERFAMILY Thioredoxin-like 66 205 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04535 Spst-Chr3 97059713 97061510 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04535 K18726 - gmx:100775212 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04535 3 97059713 97061510 Spst3g04535 3 97059713 97061510 ECH