Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04516 ATGGCAACCAGCACCACTTCACTTGCGGCTGCTCTAAAAATTCTGATCATTTTCATATTCGCAGGTTGGGTTTCTCTTTGGCTTCTTAAGCCCACCCAACTATGGACAAGAAAATGGAAACAATTAGAAGATAGCGCCAATAATACAATTTTTGGATACTATGGTCTTAGCTTCGCTGTGTACACGTTTCCTATAATTGCTATTGCAATAATTGGACTTCTTTTATTGGATTTAAAAGCTGGATATCAAAGCAGAAGCGCAAGGAGTCCATCAAAATCAAACTTCTTCTCAAACCCACTGGTGGTGAACAGTACAGTGGGAATCTTGTCCAGTGTTGAAATACTGGTAGCTTTCCTTTTTATGGTCTTCTTAGCATGGACCTACTACTCTCGTATTTCTGCAGACTTCAAAAAGCTGATGCCATACAAATCACTGAAGTTGAATACATGGCAACTCAAGTATCACAGAATAGCAACCCGATTTGGCCTGCTATCAGAGGCTTGCCTTGCTTTGTTGCTCCTTCCTATTTTAAGAGGGTTGACTGTGTTTCGCATACTTGGCATTCAGTTTGAAGCTTCAGTTAGATATCACACCTGGGTCGGAACTGCAATGATACTTTTTGCTACAATACATGGTGCAAGCACTTTGTTGGTATGGGGGGTCAGTCACCACATTCAGGATGAGATTTGGAAGTGGCAAAACACTGGACGCATATACTTCGCTGGGGAGATAACACTCGTTGTGGGGCTAGTCATTTGGGTCACTTCACTTCCCCAAATTAGAAGAAGACAGTTTGAAATCTTCTACTACACACATCATTTATATGCAGTTTTTCTAGTATTTTTCTTGTTTCACTGTGGGGATAGGCATTTTTATACGGTTTTCCCAGGAATATTCCTTTTTAGCCTTGATAAATTGATCCAAATCATACAATCAAGTCCAAAAACTTGCATGGTTTCAGCTAGAATTTTTCCTGGCAAAGCTGTGGAGCTAATTCTGCCCAAAGATCCAGGGCTGAAATATAACCCTACAAGTGTAATATTTTTGAAGATACCAACCATATCTCATCTTCAATGGCACTCTTTCAGTATAATATCTAGTTCCAGGGCTGATGATGACATTTTATCCGTGATAATAAAATGTGAAGGGTGGTGGACTGAGTCTCTTTATGACCTGATACATGCTGAACTAGAGAAAACTGAGGATAAAAGGAAGGGAATACCTGTTGCAATCGAAGGACCTTATGGACCTGCTTCTTTAGACTTTTTGAGGTATGACACCCTTCTTCTGGTTGCTGGAGGAAGTGGAATAACCCCATTTCTGAGCATTTTGACAGAAGCTGATTCAGCTACCAGCAAAAGTAGATTTCCCTCGAGAATACAACTGGTGTATGTCATCAAGAAAGCACAAGACTTCTGTCTGTTACATTCAATCTCACGTCTGTTACTCAACCAATCAACTGATAGTTTTCATTTGAACCTAAAATTGTATGTAACCCAAGAAACACAAGCAGGGGTAGGAATAGGGGAGCTACTAAATGAGTTCTTTAAAGTAAGAAACCTGCATGTGAACAGCGTGTGTTCAAATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGCCATTGCAGGATTTTGCTCCATTACTTTCCTTATCTTCATAATCTGTTTCAACCATATTATATTTCCATCTGGAAAGCGCTCCAAAATGGACAAAGAAAAGACTCCCTCTTGGGTTGTGGATCTTCTTCTGATAGCTGCTTTTGTCCTAGCTTTAGCTTGCAGCGCCTCGGTGGCAGCTATTTTGAGATGGAGAAGGCTGAGGAAAGGGATTCCCCAAATATCGCATAGAGAAATTGAACCCCTTGATCTAAGCTCAACTGAAGCTAGGAATGCACTTGAAGCACATGAAGTGCATTTTGGGGGAAGGCCTAACTTTAAAGATATATTTGGCAAGCTCCGAAATGAAAGCGGTGCATCTAATGTTGGAGTATTGGTTTGTGGGCCTGAGAGCATGAAGGAATCGGTGGCCATCGCATGCCAGCAGGAATCCGATTGTTTTAAGGTAAGTGCAAAGAGAACAGAATCCTGCCTCACTTTCCACACTCTCAACTTCACGCTGTAG 2130 0.4136 MATSTTSLAAALKILIIFIFAGWVSLWLLKPTQLWTRKWKQLEDSANNTIFGYYGLSFAVYTFPIIAIAIIGLLLLDLKAGYQSRSARSPSKSNFFSNPLVVNSTVGILSSVEILVAFLFMVFLAWTYYSRISADFKKLMPYKSLKLNTWQLKYHRIATRFGLLSEACLALLLLPILRGLTVFRILGIQFEASVRYHTWVGTAMILFATIHGASTLLVWGVSHHIQDEIWKWQNTGRIYFAGEITLVVGLVIWVTSLPQIRRRQFEIFYYTHHLYAVFLVFFLFHCGDRHFYTVFPGIFLFSLDKLIQIIQSSPKTCMVSARIFPGKAVELILPKDPGLKYNPTSVIFLKIPTISHLQWHSFSIISSSRADDDILSVIIKCEGWWTESLYDLIHAELEKTEDKRKGIPVAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILTEADSATSKSRFPSRIQLVYVIKKAQDFCLLHSISRLLLNQSTDSFHLNLKLYVTQETQAGVGIGELLNEFFKVRNLHVNSVCSNYAAYGPESPSWMAAIAGFCSITFLIFIICFNHIIFPSGKRSKMDKEKTPSWVVDLLLIAAFVLALACSASVAAILRWRRLRKGIPQISHREIEPLDLSSTEARNALEAHEVHFGGRPNFKDIFGKLRNESGASNVGVLVCGPESMKESVAIACQQESDCFKVSAKRTESCLTFHTLNFTL 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04516 709 SUPERFAMILY Riboflavin synthase domain-like 319 417 IPR017938 -
Spst3g04516 709 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 409 679 IPR039261 -
Spst3g04516 709 Pfam FAD-binding domain 319 419 IPR013112 GO:0016491
Spst3g04516 709 CDD NOX_Duox_like_FAD_NADP 319 500 - -
Spst3g04516 709 PANTHER NADPH OXIDASE 12 707 - -
Spst3g04516 709 SFLD Ferric Reductase Domain 32 686 - -
Spst3g04516 709 SFLD Ferric reductase subgroup (FRE) 10 686 - -
Spst3g04516 709 Gene3D - 598 707 IPR039261 -
Spst3g04516 709 Gene3D - 409 537 IPR039261 -
Spst3g04516 709 Pfam Ferric reductase NAD binding domain 425 682 IPR013121 GO:0016491
Spst3g04516 709 Pfam Ferric reductase like transmembrane component 162 282 IPR013130 -
Spst3g04516 709 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 296 421 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04516 Spst-Chr3 96850005 96852891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04516 182 709 Miscellaneous Gene Families AT5G50160 48.463 1.11e-177 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04516 K00521 - gmx:100816560 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04516 3 96850005 96852891 Spst3g04516 3 96850005 96852891 ECH