Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04513 ATGGATCCCCACCCAGGAACCTTCCCCGTTCTTTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGGCCCAGAACCCCCACCTCCTCCTCCGCGACAGCCTCCACTTCCCATTCCCACCACGTCGATATCGAAGGGCCATCTACCTCCGACCCTTCTTCCTCTTCCTCCATCGTGGGTCAAATGCCCAATCTCGCCGACCCGGCAATGCTGGCCTCCATGACCCGCGCCATCTCCGACGTCTCCCAGGCTCGATCCGTCCTCAAGGTCCTCGGGCCCCGGCCCACCCACGAAGAGGTCGACCAGGCCAAGGCCAAGATGGCGGACCTCGAAGCCCACCTGTCCCGGCAACTAGAAGAGATCGTGGGCGTCCCCAGGCCCCCCGAGATCAATGAGGCCCGCTGGTCGGCCCATCTCGCGGAGAAGGAGAAGGCCGTCAAGGAATCCGCGGAGAAAGAGAAGCGCATTCACAAATCCCTCATTCAGCTCGACAACATGCACGAAGCCTACGGGAAACTCCTCAAGGACGCTGAGAAGCGCTTGGTCAAGATTTACGAGGACCACGGCGCCGATTACGAAAACAACGAAAACGATGAAGACAATGACGGTACCCAAGTGAAAGAGCAGGTTGAGGGGATTTTGCAAGAGGCCGACGGAAAAGGGGTGGAGCGAGTGGCTCTTTCCGGGAAGCGGCTCAAAGTCCTGCCTGAAGCACTTAGCCACATTCCTGCAATGGTCGTCCTCGACGTCTCCACCAATCAACTTTCGGTGATTCCTGATTCCATATCTAAATTGGAAAATCTGGAGGAGTTTAATCTCTCTTCCAATGTTTTGGAGTCGCTGCCAGATTCAATTGGCTCGTTGCAGAAGTTGAAAGTCCTCAATGTGTCCGGAAACAAGCTTACTGCTCTTCCGGATTCCATTAGTAAGTGCAGCTCATTGGTGGAGCTAGATGCAAGCTTTAACACCCTGACGTATTTGCCAACAAACATTGGATATGAGTTGCATAATTTACAAAAGCTCATGATTCAATTGAACAAGATTCGATCTCTTCCCTCATCTGTTTGTGAGATGAAATCCTTGCGCTATCTGGATGCTCACTTTAACGAGCTGCGCGGGCTTCCTATTGCAATTGGGAAATTGACTAATCTTCAAGTTCTAAACCTGAGCAGTAACTTCAGTGACCTTCAAGAACTTCCAGAGACATTTGGTGATTTGATTAACCTCAGGGAATTGGATCTCAGCAACAACCAAATTCATGCACTTCCTGATTCTTTTGGTCGCCTTCATAACTTGACCAAGCTAAAACTGGATCAGAATCCTCTTGAAGTGCCACCCAAGGATATTGTGGATCAAGGGGTCCAAGCCGTGAAGAGCTTCATGTCTCAGAGATGGATTGATATATTGGCGGAGGAAGAAAGAAAAAACACACAGGAATTGCAAGAACCAGGAGAAAATGGCTGGTTAACGCGAAGCACCTCTTGGCTGAAGAACGTTTCTGAAAATGTAACTGAGATGATGATGTCCCCCAGAACTCCCAAAGATGCGTATCTTAATCAGCAGCTATGA 1566 0.5077 MDPHPGTFPVLSYVMSRLPSFGPRTPTSSSATASTSHSHHVDIEGPSTSDPSSSSSIVGQMPNLADPAMLASMTRAISDVSQARSVLKVLGPRPTHEEVDQAKAKMADLEAHLSRQLEEIVGVPRPPEINEARWSAHLAEKEKAVKESAEKEKRIHKSLIQLDNMHEAYGKLLKDAEKRLVKIYEDHGADYENNENDEDNDGTQVKEQVEGILQEADGKGVERVALSGKRLKVLPEALSHIPAMVVLDVSTNQLSVIPDSISKLENLEEFNLSSNVLESLPDSIGSLQKLKVLNVSGNKLTALPDSISKCSSLVELDASFNTLTYLPTNIGYELHNLQKLMIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPIAIGKLTNLQVLNLSSNFSDLQELPETFGDLINLRELDLSNNQIHALPDSFGRLHNLTKLKLDQNPLEVPPKDIVDQGVQAVKSFMSQRWIDILAEEERKNTQELQEPGENGWLTRSTSWLKNVSENVTEMMMSPRTPKDAYLNQQL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04513 521 ProSiteProfiles Leucine-rich repeat profile. 289 310 IPR001611 GO:0005515
Spst3g04513 521 SUPERFAMILY L domain-like 215 445 - -
Spst3g04513 521 FunFam Plant intracellular Ras-group-related LRR protein 9 141 325 - -
Spst3g04513 521 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Spst3g04513 521 MobiDBLite consensus disorder prediction 21 61 - -
Spst3g04513 521 FunFam Plant intracellular Ras-group-related LRR protein 2 329 504 - -
Spst3g04513 521 PANTHER - 222 391 - -
Spst3g04513 521 Coils Coil 99 119 - -
Spst3g04513 521 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Spst3g04513 521 SMART LRR_typ_2 241 263 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 428 451 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 405 427 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 380 404 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 287 310 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 264 286 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 334 357 IPR003591 -
Spst3g04513 521 SMART LRR_typ_2 311 333 IPR003591 -
Spst3g04513 521 SMART LRR_bac_2 310 329 - -
Spst3g04513 521 SMART LRR_bac_2 380 401 - -
Spst3g04513 521 SMART LRR_bac_2 405 424 - -
Spst3g04513 521 SMART LRR_bac_2 264 283 - -
Spst3g04513 521 SMART LRR_bac_2 241 260 - -
Spst3g04513 521 SMART LRR_bac_2 334 353 - -
Spst3g04513 521 SMART LRR_bac_2 287 306 - -
Spst3g04513 521 SMART LRR_bac_2 357 376 - -
Spst3g04513 521 Pfam Leucine rich repeat 381 441 IPR001611 GO:0005515
Spst3g04513 521 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Spst3g04513 521 Gene3D Ribonuclease Inhibitor 135 323 IPR032675 -
Spst3g04513 521 Gene3D Ribonuclease Inhibitor 324 453 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04513 Spst-Chr3 96801859 96804145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04513 250 449 Receptor kinase-like Gene Family AT5G20480 34.112 1.01e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04513 - - vun:114179436 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04513 3 96801859 96804145 Spst3g04513 3 96801859 96804145 ECH