Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04511 ATGGAGTCTGCTCTAGTGATTAAGGTGAAATATGGAGATACCCTCAGGCGCTTCACTGCTCGTGTGGATGAGAATAATCGACTGGATCTTGACATGGGTGGGTTGAGAGTGAAGATATGTTCTATCTTCAGTTTCAGTTCTGATGCAAATTTTATTCTGAGATATGTGGATGAAGATGGCGACATGGTGACTCTAGTTGATGATGAAGATTTGCGTGATGTGATGAGGCAGCAATTGAAATTCTTGAGAATTGATGTACTTATGAACAATGACGGCGGTGCTAAATCAAATGCTTGGTCTAGTGGAAGTACCACCCCTTTAAAGTCTCCTGTCACAAACCCACCTCTGGGTAGAAATGCTACATTACATGAGGCACTCTCTAAATTGTCACTTTCAAAAGCAGCATCTTCAAGTCCCTTGGTTGATAATCTTGCCAATTCAATTTTGAAAATGGGACAATCTGTTCTAAATTCTCATTTTCATTCTCGTGATGAAGCTGGTACAAGTTCAAAAACTGGTGTTCCTGAAGAGCCTATCCCTTCTAAAACTATAGGTTCTCAATCTTCACACGTGGACTCAGCCACCAATGCTACTGTCCATCGTGATAATGCCACCCCCTCAAGCTTTCCTGTTCCAAACCCAACTCTGATTGGAAATGCAGTTAAAGTTGACATCCCATCTTCCCTGCCTGAGCCAGTACGGGAACTTATTTCCAATTTATTCCATCCGAATGCTGCTTCTTCAAGTCAGCGGCCTGATAATCTTGCTGATTTAATATCCCTAGTGGGACATTCTGTTCTAAATTCTTACTGCCAGCCTCATGTTGCAACTGGTCCATTCTCTGAAAATGGTGTTCCTGAAGGACCAATCACTCGTGAAGCAAGAGGTCCACAGATGCAATCTGTAGATTTGCCTTCCAATGCCACTCAACAGGTGGAGGCTGGAAACATAAGTAGAGATGTAGCCTCTGCATCCAATGCCAGTAAACAAGTGGAAGCTGGGAACGTAATCAGTGCAACAACAGCTGCAGAAGTAGCCACTGTTGATCTCAATATCCCTCCATGTGATCCCTATTCATCTCAGTCCACTAATGTAAATAAGGATCCACTTTCATCAGAAGTTCCTGATGGTGATGGCAAGAAGGTTAAAATCTCGATTGTCTGTAGTTCTGCTGGTAAGGATGACAATGGTGGTCCATCCTCAAGTCTTGCCGGTCCTAATAACAGTTCAACCCAGACTAGTTCATTGAGTGCTGATGCTTTCTTTGACTGTCCATTTTCTGGAATGGATATTAATTCTTGGACACCAATTTTTGGAAGCGCTCCAATGCCCCCATTTAAAAGGAGCCATCGTCATACTGAGGCAATGACTGGTATGTTCCACAAAGGTGTCCGCTGTGATGGTTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCTAGAGTAAAGGAAAATTATGATCTCTGCCACATTTGTTACAATGAAATGGGTAATGGGACGGATTATATCAGAATGGACCGCCCTGCATCTGCTCGTTTCCCTCGATGTGTATATGAACAATCCAAAAACTTCCCAACATTACCACCACATATTTTTAAGAGAAGTTCCATTTTGAAGCACGGAAGGCCAAAGCTAGATAGTCGGTTCATTTTGGATGTCAATGTGATAGATGGAACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACAGTAGTGTGGCCCAAGGCAACTCAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGAATTAGAGGTTCAGGATGGTGTCCCAGTAGAGAAGGAAATTGACATTGCAGTTGACTTTACAGCTCCTAAGATACCTGGTCGATACATATCATACTGGAGGTTGGCAACTTCATCTGGAAATAAATTTGGCCAACGTGTTTGGGTACTTATACAGGTTGATGCCTCTCTCAAAGACTCATTCTATGATAACTCTCAAGGTCTGAACTTGAATGTTCCGCTTGATGTCAGTGGCTCTGCAGGACCTCTGCTTATAGATATCAATGTTAGGCCAACCGAAGATGATACTTTTCTTCAACCCTGTATTCCTGATGATCCCATTGAACCTGTGAAACAAATGGTTGATAAGGAACCAAGGTTGGAGCTGGAGAAGGAATTCCCGATAAATGAAGCTACTTTTGTTGGCCCTGTTGCCTCAGCCCCTGCTGCAAATTCCGTAGCACCTTCATCAGTTTCTTATCCTATTATTGATTTCTCTGAAACAACCCCAGCTGTTGCTGTTCCCTCTAATCAGCAATCCTCAACTGTGGATGTATCATCATCCGCTGGTGTAGGGACTAGTGGAATTAATTCTGTGGAAGAGTGTCTACTTAAAGAACTTGAGGAGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGATCTTGAGGATGAATGAGTACGATCTGGAGCAATCCCTAGACGAGCTCTGCAGTGTTTCTGAGTGGGACCCTATCCTTCTAGAGTTACAAGAGATGGGTTTCCTTGACAAAGAGATGAATAAGAGGTTGCTTAAGAAAAACAATGGAAGCATAAAACGTGTTGTTATGGATTTAATCCAAGGAGAATAG 2634 0.4267 MESALVIKVKYGDTLRRFTARVDENNRLDLDMGGLRVKICSIFSFSSDANFILRYVDEDGDMVTLVDDEDLRDVMRQQLKFLRIDVLMNNDGGAKSNAWSSGSTTPLKSPVTNPPLGRNATLHEALSKLSLSKAASSSPLVDNLANSILKMGQSVLNSHFHSRDEAGTSSKTGVPEEPIPSKTIGSQSSHVDSATNATVHRDNATPSSFPVPNPTLIGNAVKVDIPSSLPEPVRELISNLFHPNAASSSQRPDNLADLISLVGHSVLNSYCQPHVATGPFSENGVPEGPITREARGPQMQSVDLPSNATQQVEAGNISRDVASASNASKQVEAGNVISATTAAEVATVDLNIPPCDPYSSQSTNVNKDPLSSEVPDGDGKKVKISIVCSSAGKDDNGGPSSSLAGPNNSSTQTSSLSADAFFDCPFSGMDINSWTPIFGSAPMPPFKRSHRHTEAMTGMFHKGVRCDGCGVYPITGPRFKSRVKENYDLCHICYNEMGNGTDYIRMDRPASARFPRCVYEQSKNFPTLPPHIFKRSSILKHGRPKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTVVWPKATQLVWIGGDKFSDSHSVELEVQDGVPVEKEIDIAVDFTAPKIPGRYISYWRLATSSGNKFGQRVWVLIQVDASLKDSFYDNSQGLNLNVPLDVSGSAGPLLIDINVRPTEDDTFLQPCIPDDPIEPVKQMVDKEPRLELEKEFPINEATFVGPVASAPAANSVAPSSVSYPIIDFSETTPAVAVPSNQQSSTVDVSSSAGVGTSGINSVEECLLKELEEMGFKQVDLNKEILRMNEYDLEQSLDELCSVSEWDPILLELQEMGFLDKEMNKRLLKKNNGSIKRVVMDLIQGE 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04511 877 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Spst3g04511 877 SUPERFAMILY RING/U-box 455 511 - -
Spst3g04511 877 FunFam next to BRCA1 gene 1 protein-like 542 660 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 181 212 - -
Spst3g04511 877 SMART PB1_new 4 89 IPR000270 GO:0005515
Spst3g04511 877 CDD UBA_NBR1 836 874 - -
Spst3g04511 877 Gene3D - 1 88 - -
Spst3g04511 877 Gene3D - 835 877 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 357 378 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 394 411 - -
Spst3g04511 877 Pfam Ig-like domain from next to BRCA1 gene 555 655 IPR032350 -
Spst3g04511 877 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 3 876 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 278 301 - -
Spst3g04511 877 SMART zz_5 460 505 IPR000433 GO:0008270
Spst3g04511 877 Gene3D - 787 834 - -
Spst3g04511 877 CDD NBR1_like 544 656 IPR032350 -
Spst3g04511 877 Pfam Zinc finger, ZZ type 461 496 IPR000433 GO:0008270
Spst3g04511 877 MobiDBLite consensus disorder prediction 161 212 - -
Spst3g04511 877 Gene3D Immunoglobulins 541 659 IPR013783 -
Spst3g04511 877 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Spst3g04511 877 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 827 876 IPR015940 -
Spst3g04511 877 SUPERFAMILY CAD & PB1 domains 1 86 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 95 114 - -
Spst3g04511 877 SUPERFAMILY UBA-like 837 875 IPR009060 GO:0005515
Spst3g04511 877 FunFam protein NBR1 homolog 836 877 - -
Spst3g04511 877 MobiDBLite consensus disorder prediction 390 411 - -
Spst3g04511 877 Gene3D - 453 508 IPR043145 -
Spst3g04511 877 ProSiteProfiles Zinc finger ZZ-type profile. 461 511 IPR000433 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04511 K17987 - gmx:100778692 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04511 3 96748324 96752323 Spst3g04511 3 96748324 96752323 ECH