Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04484 ATGTTCCCGCTTCAGCAACTTGCCCTTGCATACACTCCACCTTTCACTTCCAAAATGAACCATTCCGCACCACCCAAACACCACTGCGTGGCTTCCCTAAAAACCCTAACACCCCACATCACCTGTCTAGCGGTCCACCGTAACCTCCTCTACGCCGCATCCTTAAACCTCATTAACGTCTTTGACCTCTCCCATTACTCCCACATCGACGCCTTCAACCAAAGCCCCACCTCAGGATTTGTCAAGTCCATCGCCTTCACCAACTCAAAGGTCTTCACCGCTCACCAAGACTGCAAGATTCGCGTCTGGCTCATCACCCCCTCCAAACGACACCGTCTCATCTCCTCCCTTCCCACTGTTACCGACCGTCTCCGCCGCTGCATCGTTCCCCGTAACTACGTCAGCGTTCGCCGCCACAAGACCAGGCTCTGGATCCAGCATTGTGATACCGTGTCCGGTTTAGCGGTGGACCAGAGGTTCATGTATTCGGTTTCTTGGGATAAGAGCTTTAAGGTCTGGGACTTGTCTAGTTACCGGTGTCTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTGTGGTCGTTAACGGGGACGGCACCGTATACACGGCGTCCGCGGATGGGAGCATCAAGGTTTGGAGAAGGTACGGCGAGGCGAAACGGCACGCGTTGGTGAGCACCATTGGGAGGCAGAAATCGACGGTTAATGCGCTTGCGTTGGACGGCTGTGGCGCGGCGTTGTTTTCGGGAGGTTGCGACGGGGCGATCTGCCGGTGGGAGTGGGGGTGTGAGGAAATCGGCATGGTGAAGACAGAGAGGATGATGGGTCACAGTGGGGCCATATTGTGTCTGATCCACGTGGCGGATTTGTTGGCGAGTGCGTCAGCGGATCTAACGGTTAGGATCTGGCAACGTGAGAGAGGGAGGAGTGGGTATGGTTGCAGGGCTGTGCTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCATTTCGGGGAGGTGAAGATGAGTCAAACGGCGTGGTTAGGCTATTGAGTGGAAGCCTTGACGGGGAGATTAAGGTGTGGGAAGTGTTTGGTTCGGCTTGTTCTGCTACCTAA 1104 0.5571 MFPLQQLALAYTPPFTSKMNHSAPPKHHCVASLKTLTPHITCLAVHRNLLYAASLNLINVFDLSHYSHIDAFNQSPTSGFVKSIAFTNSKVFTAHQDCKIRVWLITPSKRHRLISSLPTVTDRLRRCIVPRNYVSVRRHKTRLWIQHCDTVSGLAVDQRFMYSVSWDKSFKVWDLSSYRCLESVKAHEDAINAVVVNGDGTVYTASADGSIKVWRRYGEAKRHALVSTIGRQKSTVNALALDGCGAALFSGGCDGAICRWEWGCEEIGMVKTERMMGHSGAILCLIHVADLLASASADLTVRIWQRERGRSGYGCRAVLEGHEKPVKSLVAFRGGEDESNGVVRLLSGSLDGEIKVWEVFGSACSAT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04484 367 FunFam BnaA09g28200D protein 134 219 - -
Spst3g04484 367 SMART WD40_4 268 305 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 26 62 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 177 215 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 312 358 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 137 174 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 222 261 IPR001680 GO:0005515
Spst3g04484 367 SMART WD40_4 65 104 IPR001680 GO:0005515
Spst3g04484 367 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Spst3g04484 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 214 - -
Spst3g04484 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 305 IPR001680 GO:0005515
Spst3g04484 367 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 360 IPR045182 -
Spst3g04484 367 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Spst3g04484 367 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Spst3g04484 367 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Spst3g04484 367 Gene3D - 133 365 IPR015943 GO:0005515
Spst3g04484 367 Gene3D - 22 124 IPR015943 GO:0005515
Spst3g04484 367 SUPERFAMILY WD40 repeat-like 26 364 IPR036322 GO:0005515
Spst3g04484 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 214 IPR001680 GO:0005515
Spst3g04484 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 359 IPR001680 GO:0005515
Spst3g04484 367 Pfam WD domain, G-beta repeat 315 357 IPR001680 GO:0005515
Spst3g04484 367 Pfam WD domain, G-beta repeat 277 304 IPR001680 GO:0005515
Spst3g04484 367 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04484 Spst-Chr3 96432676 96433779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04484 87 358 Acyl Lipid Metabolism Gene Families AT3G18860 22.909 5.26e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04484 - - aprc:113874855 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04484 3 96432676 96433779 Spst3g04484 3 96432676 96433779 ECH