Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04483 ATGGCGAAAACATGCAAGTCGCAAGAAGAAATTGCGTGTGAAGCTATTAAACATGCTTTGAAGGCTCTACGGAAACGCCATTTGCTTGAGGAAGCCGCTCATGGTCCCGCTGTTCTAGCACTTTCTAGACCCATAGCTTCTCAGGGCTCTGAGTGGAAAGAGAAAGCAGAGAATCTTCAAGTGGAACTTCAGCAATGCTACAAAGCTCAATCACGCCTGTCTGAGCAACTTGTTGTGGAAGTAGCTGAGTCCAGAGCTTCAAAAGCGTTGGTTCAAGAGAAAGAAAATGCAGTTGCTGATTTGCAAAAGGAGTTGACGGAATTGAGGGATGAGTGCTCTCAATTAAAGGAAGACTTGGAAGAAAAAATTAAATCTCTAGAACTGATTATCAGTGAGAATTCTGAACTTAAAGCCCAACTGCAGCAGATGACTACTAAAGCCAATAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCCAACGCACTGTACGAAGACATGGTTGAGAAACTAAAGGCCAGTGGTTTAGAGCAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCAAAGTGAAGAAGGTGCTGAATTTTTTTTAGAGTCAAACATCCCTTCCACATGTAAATATAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCCAGTATTTTGATTACTGGGGGACAAGATCGTTTAGTTAAAATGTGGGATACAAATACAGGATCCTTATGTTCTACACTTCATGGCTGCCTTGGCTCAGTGTTAGATCTCACGATTACCCATGATAATCGATCAGTCATTGCTGCAAGCAGCTCAAACAACTTATATGTATGGGATGTCAACTCAGGCCGTGTCCGTCATACCCTAACTGGCCACACAGATAAAGTTTGTGCTGTTGATGTTAGCAAGATTTCAAGTCGTCATGTTGTCAGTGCTGCTTATGATCGCACCATAAAAGTTTGGGACCTAATGAAGGGTTACTGCACTAGCACAATCATTTTTCACAGCAACTGCAATGCTCTTACCTTTAGCATGGATGGTCAGACAATATTTTCAGGACATGTTGATGGTAATCTTAGGTTATGGGACATTCAGAGCGGAAAGCTACTCAGCGAGGTTGCTGCACATTCACTTGCAGTCACATCAATATCCCTTTCTCGAAATGGAAATGTTGTACTGACCAGTGGAAGGGACAATTTGCACAATTTGTTTGATGTGAGATCTCTTGAAGTTTGTGGCACACTAAAAGCGGCGGGAAACAGAGTTGCTTCTAACTGGAGTCGCTCCTGTATTAGTCCAGATGATAGTCACATGGCTGCTGGGTCTGCCGATGGATCTGTCTATATTTGGTCAAGATCTAAAGGTGATATAGTCGGTACTCTGAAGGAACACACTTCTTCTGTTCTGTGTTGTAGGTGGAGCGGTATTGGAAAACCCCTAGCTTCAGCTGACAAGAATGGGGTAGTTTGTGTCTGGACATAA 1545 0.4324 MAKTCKSQEEIACEAIKHALKALRKRHLLEEAAHGPAVLALSRPIASQGSEWKEKAENLQVELQQCYKAQSRLSEQLVVEVAESRASKALVQEKENAVADLQKELTELRDECSQLKEDLEEKIKSLELIISENSELKAQLQQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVEKLKASGLEQLARQQVDGIVRQSEEGAEFFLESNIPSTCKYRLRAHEGGCASMLFEYNSSILITGGQDRLVKMWDTNTGSLCSTLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLMKGYCTSTIIFHSNCNALTFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLKAAGNRVASNWSRSCISPDDSHMAAGSADGSVYIWSRSKGDIVGTLKEHTSSVLCCRWSGIGKPLASADKNGVVCVWT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04483 514 Coils Coil 84 160 - -
Spst3g04483 514 FunFam Autophagy-related protein 16 isoform A 357 514 - -
Spst3g04483 514 CDD WD40 222 513 - -
Spst3g04483 514 Pfam Autophagy protein 16 (ATG16) 48 173 IPR013923 -
Spst3g04483 514 FunFam Autophagy-related protein 16 isoform A 89 162 - -
Spst3g04483 514 FunFam Autophagy-related protein 16 isoform A 214 356 - -
Spst3g04483 514 CDD Atg16_CCD 88 176 - -
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 429 IPR001680 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Spst3g04483 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Spst3g04483 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Spst3g04483 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Spst3g04483 514 Gene3D - 358 514 IPR015943 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Spst3g04483 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Spst3g04483 514 Gene3D - 214 357 IPR015943 GO:0005515
Spst3g04483 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Spst3g04483 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Spst3g04483 514 Pfam WD domain, G-beta repeat 477 513 IPR001680 GO:0005515
Spst3g04483 514 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Spst3g04483 514 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515
Spst3g04483 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Spst3g04483 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Spst3g04483 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 485 IPR045160 GO:0000045
Spst3g04483 514 Gene3D - 90 162 - -
Spst3g04483 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Spst3g04483 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Spst3g04483 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Spst3g04483 514 Coils Coil 169 189 - -
Spst3g04483 514 SUPERFAMILY WD40 repeat-like 217 513 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04483 Spst-Chr3 96415065 96417370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04483 310 513 Miscellaneous Gene Families AT5G08390 20.976 1.38e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04483 K17890 - gmx:100778336 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04483 3 96415065 96417370 Spst3g04483 3 96415065 96417370 ECH