Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04482 ATGGAGATGAAAAAAGTTTTTTGGGCTGTTGTATTGTTTGGTTTGGTTCTTGGAGTGACCGAGAGCTTTGATTTCAAAGAGAAGGAGTTGGAATCTGAGGATGGGTTGTGGGATTTGTACAAGAGGTGGAGGAGCTTCCACACGGTTTCGCGAAGCCTGGATGAGAAGCAGAAGCGCTTCAACGTGTTCAAAGCCAACGCGATGCATGTCCACAACACGAATAAAATGGACAAGCCTTACAAGCTGAAGTTGAACAGGTTCGCTGACATGACCAACCATGAATTCAGGAGCATCTATGCTAGCTCCAAGGTTAGTCACCACAGAATGTTCCAAGGCATGCCACGCGGGAATGGTACTTTCATGTATGAGAACGTTGACAGGGTTCCTCCTTCGGTGGATTGGAGGAAGAAAGGTGCTGTCACAGATGTAAAGGATCAAGGAAAATGTGGTAGTTGTTGGGCATTTTCAACCGTTGCAGCTGTTGAAGGTATTAATCAAATCAAGACACATAAGCTAGTGTCCTTGTCTGAGCAAGAACTTATAGATTGTGACACTAGAGAGAATGAAGGATGCAATGGTGGCTTAATGGAAACTGCATTCGAGTTTATCAAACAACATGGAATAACTACAGAAAGCAATTACCCTTATGAAGCAAAAGATGGAACTTGTGTTGCATCAAAGGTGAAGGAACCTGCAGTGTCAATTGATGGACATGAGAATGTCCCCGTGAACAAGGAAGCTGCATTGCTCAAAGCTGTTGCTCATCAACCTGTATCAGTAGCCATCGATGCTGGTGGATTTGGCTTCCAGTTCTACTCAGAGGGAGTATTTACGGGACCTTGTGGCACTGATCTGAATCATGGAGTAGCAATTGTGGGGTACGGAACAACTCAAGAGGGAACCAAATATTGGATAGTGAAGAACTCATGGGGATCGGAATGGGGAGAAAAGGGTTACATTAGAATGCATAGAAGCGTTTCTGACAAGAAAGGTCTATGTGGCATAGCAATGGAGGCTTCCTATCCAATCACAAAATCAATGGAACGTTCATCATTTCTTAGGGACGAGCTTTGA 1074 0.4423 MEMKKVFWAVVLFGLVLGVTESFDFKEKELESEDGLWDLYKRWRSFHTVSRSLDEKQKRFNVFKANAMHVHNTNKMDKPYKLKLNRFADMTNHEFRSIYASSKVSHHRMFQGMPRGNGTFMYENVDRVPPSVDWRKKGAVTDVKDQGKCGSCWAFSTVAAVEGINQIKTHKLVSLSEQELIDCDTRENEGCNGGLMETAFEFIKQHGITTESNYPYEAKDGTCVASKVKEPAVSIDGHENVPVNKEAALLKAVAHQPVSVAIDAGGFGFQFYSEGVFTGPCGTDLNHGVAIVGYGTTQEGTKYWIVKNSWGSEWGEKGYIRMHRSVSDKKGLCGIAMEASYPITKSMERSSFLRDEL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04482 357 Gene3D Cysteine proteinases 16 345 - -
Spst3g04482 357 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Spst3g04482 357 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Spst3g04482 357 CDD Peptidase_C1A 129 342 IPR039417 -
Spst3g04482 357 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Spst3g04482 357 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Spst3g04482 357 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Spst3g04482 357 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Spst3g04482 357 SUPERFAMILY Cysteine proteinases 40 343 IPR038765 -
Spst3g04482 357 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Spst3g04482 357 SMART Inhibitor_I29_2 40 95 IPR013201 -
Spst3g04482 357 FunFam Senescence-specific cysteine protease SAG39 20 344 - -
Spst3g04482 357 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 342 IPR013128 GO:0008234
Spst3g04482 357 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Spst3g04482 357 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04482 Spst-Chr3 96410704 96412427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04482 K16292 - gmx:100806581 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04482 3 96410704 96412427 Spst3g04482 3 96410704 96412427 ECH
Spst3g04482 3 96410704 96412427 Spst9g02062 9 41574060 41575689 PCT