Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04460 ATGGACCTTGTAACCTATGGCTCTTACTATGATGTACCAGAGGGAGTGGATATTCGAGGAAGATATGATGCAGAGTTTGCAAAAATCCTCACAAAAGATGCTTTGAAATTCGTTACTGACCTTCATCGTGAGTTCAGGAACCATATAAAGTATGCATTAGAAAGGAGAAGAGAGGCAAAGAGGAGGTACAATGAAGGGGCTCTTCCGGGGTTTGATCCTGCCACCAGGTACATAAGGGAGCAGGAGTGGGTATGTGCACCTGTTCCACCAGCTGCTGCAGATAGGAAAGTGGAAATCACTGGCCCTGTGGAGAGAAAGATGATCATCAATGCTCTCAACTCTGGAGCTAAAGTCTTCATGGCTGATTTTGAAGATGCACTGTCACCCAGCTGGGAAAATCTTATGAGAGGCCAAGTGAACTTGAAGGATGCTGTGGATGGCACCATAAGCTTCCATGACAAAGTAAGAAACAGGGTTTACAAGCTCAATGATCAAACAGCAAAGCTTTTTGTTCGACCAAGAGGTTGGCACCTACCCGAGGCACATATACTCATTGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTTTTTCTACCACAATCACTCTGAATTTCGGCGTACTCAAGGTGCTGGCTTTGGCCCCTTCTTTTATCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAATAACGTGTTTGAGAAAGCTGAGAAGGTAGCAGGCATCGAAAGAGGAAGCATAAGGGCGACGGTTCTGATAGAAACACTTCCTGCAGTGTTTCAAATGAATGAAATTCTGTATGAGCTGAAGGAGCACTCGGTGGGTCTGAACTGTGGGCGCTGGGATTACATTTTCAGTTATGTGAAGACCTTCCAGGCTCACCCAGATCGCCTCCTACCAGACAGGGTGCAGGTTGGCATGACTCAACACTTCATGAAGAGCTACTCTGACCTCCTCATCAGGACATGCCACAGGCGCGGTGTGCATGCTATGGGAGGAATGTCAGCGCAGATTCCAATCAAGGAAGACCCAGTGGCTAATGAGTTGGCACTGGAACTTGTAAGGAAGGACAAGCTTAGAGAAGTGAAGGCAGGGCACGATGGGACTTGGGCTGCACATCCTGGTCTCATTCCAGCTTGCATGGAGGTTTTCAACAACAACATGGGCAATGCTCCTAACCAGATAGAGACCAGCAAACGTGAAGATGCTGCAAACATAACTGAACAAGACCTATTGCAGATACCAAGAGGAGTCCGCACTATGGAAGGTCTGAGATTGAACACAAGGGTGGGGATTCAGTACGTGGCAGCATGGCTCACTGGAATCGGTTCTGTGCCTCTATACAATCTAATGGAAGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAATTGGCAGTGGCTAAGGTATGGAGTGGAACTCAATGGGGATGAACTTGGAGTGAAAGTGAGCAGAGAACTTTTTGGTAGGGTGGTTGAGGAAGAGATGGCAAGGATTGAAAAGGAAGTGGGGACAGAGAAGTTGAAGAGGGGAATGTACAGGGAGGCCTGCAAGATCTTCACTAGCCAATGCACCTCCCCAGCACTTGATGATTTTCTAACTCTGGATGCGTACAATTACATAGTCCTGCATCACCCCAAGGAATCATCAAAGCTTTGA 1674 0.4731 MDLVTYGSYYDVPEGVDIRGRYDAEFAKILTKDALKFVTDLHREFRNHIKYALERRREAKRRYNEGALPGFDPATRYIREQEWVCAPVPPAAADRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVDGTISFHDKVRNRVYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLFFYHNHSEFRRTQGAGFGPFFYLPKMEHSREAKIWNNVFEKAEKVAGIERGSIRATVLIETLPAVFQMNEILYELKEHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMSAQIPIKEDPVANELALELVRKDKLREVKAGHDGTWAAHPGLIPACMEVFNNNMGNAPNQIETSKREDAANITEQDLLQIPRGVRTMEGLRLNTRVGIQYVAAWLTGIGSVPLYNLMEDAATAEISRVQNWQWLRYGVELNGDELGVKVSRELFGRVVEEEMARIEKEVGTEKLKRGMYREACKIFTSQCTSPALDDFLTLDAYNYIVLHHPKESSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04460 557 CDD malate_synt_A 29 547 IPR006252 GO:0004474|GO:0006097
Spst3g04460 557 NCBIfam malate synthase A 29 546 IPR006252 GO:0004474|GO:0006097
Spst3g04460 557 FunFam Malate synthase 12 422 - -
Spst3g04460 557 FunFam Malate synthase 423 547 - -
Spst3g04460 557 PIRSF Malate_synth 8 548 IPR006252 GO:0004474|GO:0006097
Spst3g04460 557 ProSitePatterns Malate synthase signature. 275 290 IPR019830 GO:0004474|GO:0006097
Spst3g04460 557 SUPERFAMILY Malate synthase G 10 548 IPR011076 GO:0003824
Spst3g04460 557 Gene3D Malate synthase, domain III 423 547 IPR044856 -
Spst3g04460 557 Pfam Malate synthase 17 547 IPR001465 GO:0004474|GO:0006097
Spst3g04460 557 Gene3D Malate synthase, domain 3 12 422 IPR046363 -
Spst3g04460 557 PANTHER MALATE SYNTHASE 10 553 IPR006252 GO:0004474|GO:0006097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04460 Spst-Chr3 96140400 96142567 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04460 K01638 - gmx:732628 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04460 3 96140400 96142567 Spst3g04460 3 96140400 96142567 ECH