Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04446 ATGCAAAGTTCAGAGGGTTTTGCAAGGAGCTGTTTCTGCTTTTTCTCTTACTCGAGTGTTGGAAGCGGGAAAGAGATGCATCCTTACTCTATGACTCTAATCAGGCAAATACTGAGAACTGAAGCTGCAGCAGAGGGAGAGAGATCTGCAATGGCTATGGGAGAGGGAGAGGCAGTGGTGGCATGCAGTGACCAGAGCATGAAAATAGGGGCGTCGATGTGGGACTTGGAAACGGGAGAAAAACTGCTTCATATTCCATCCTGTGCCTCGCCACCTTTGGGCTTCTTGTGCCTCAGAAACCGCTTCCTCGTGGCTTCACAGGTGAACAGACACGGCTCTGTTGGCGATGGAACCATTGCAGTTTGGTCCCTCAACAAGCCTCAACATCCACTGTTGAACTACACGGTGGAGGCTATTGGGGCACTTTCTTGTACGAATGATGGCATATATCTTGTTGGAGGAGCTTTGTCTGGAAATGCTTATCTATGGGATGTGATTAGTGGAAAATTGCTGAAGACTTGGAAGGCTCATAACAAATCCTTAAACTGCATGTTATTTTCACATGACAATTCTCTTCTCATTTCTAGTTCAGATGATGGAATGATATGTGTTTGGGATTTTCTCTCAGGAAAGCATATTCAAACTCAAGTTTATCCTTTGGCCATAACTTCCATTGCCCTTCACCAAAGTGAAAGTCTTTTATTTTGCGGAACGGAAAAAGCAACAATATTTGTCAACAACCTTGATTTTGGTCGGGGCGAAGGTCCTTTTGTTGTTACTGAAGGCCAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTAACCGTATCTCGGTCATGCCTAATATCTGCCTCTGAAGATTGCTCGATTTGCGTTTGGGATATCTTCAGTTGGGAAATCCTTCGAAGGTTTAGTCTCCAAAAAGAAAGATGTACCTACAGTCACAACCATGCAGATGAAAGTGGAAACAAGTATAGAGAGTCGTGTATGGGCAACAAACATGACAAAGCATGTCATGGTGATAAACAAACAATTGAAGTCACAACTATTAGACTTGATGCAACATAG 1077 0.4373 MQSSEGFARSCFCFFSYSSVGSGKEMHPYSMTLIRQILRTEAAAEGERSAMAMGEGEAVVACSDQSMKIGASMWDLETGEKLLHIPSCASPPLGFLCLRNRFLVASQVNRHGSVGDGTIAVWSLNKPQHPLLNYTVEAIGALSCTNDGIYLVGGALSGNAYLWDVISGKLLKTWKAHNKSLNCMLFSHDNSLLISSSDDGMICVWDFLSGKHIQTQVYPLAITSIALHQSESLLFCGTEKATIFVNNLDFGRGEGPFVVTEGQPLELKGHNGAITALTVSRSCLISASEDCSICVWDIFSWEILRRFSLQKERCTYSHNHADESGNKYRESCMGNKHDKACHGDKQTIEVTTIRLDAT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04446 358 SUPERFAMILY WD40 repeat-like 74 311 IPR036322 GO:0005515
Spst3g04446 358 Pfam WD domain, G-beta repeat 168 206 IPR001680 GO:0005515
Spst3g04446 358 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Spst3g04446 358 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Spst3g04446 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 306 IPR001680 GO:0005515
Spst3g04446 358 SMART WD40_4 167 206 IPR001680 GO:0005515
Spst3g04446 358 SMART WD40_4 129 164 IPR001680 GO:0005515
Spst3g04446 358 SMART WD40_4 209 247 IPR001680 GO:0005515
Spst3g04446 358 SMART WD40_4 260 297 IPR001680 GO:0005515
Spst3g04446 358 Gene3D - 30 219 IPR015943 GO:0005515
Spst3g04446 358 PANTHER WD-REPEAT PROTEIN 18 202 315 IPR045227 -
Spst3g04446 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 206 - -
Spst3g04446 358 Gene3D - 220 356 IPR015943 GO:0005515
Spst3g04446 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Spst3g04446 358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04446 Spst-Chr3 95989820 95998761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04446 148 305 Miscellaneous Gene Families AT5G08390 25.767 8.84e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04446 K14829 - gmx:102662801 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04446 3 95989820 95998761 Spst3g04446 3 95989820 95998761 ECH