Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04314 ATGGCGACAAAGAGCTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCGGCTAGGATCAGGGAGAAATACCCAGACCGTATCCCAGTGATTGTGGAGAAAGCAGAAAGAAGTGATATTCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTGACAGTTGGACAGTTTGTCTATGTTATCCGCAAAAGGATTAAATTAAGCGCAGAAAAGGCGATATTTATCTTTGTTGACAACGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGAGGAGAAGAAGGAAGAGGATGGGTTTCTTTATGTCACTTACAGCGGGGAGAACACCTTTGGGGATCTGACTTCCCACTAG 372 0.4409 MATKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKEEDGFLYVTYSGENTFGDLTSH 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04314 123 FunFam Autophagy-related protein 1 118 - -
Spst3g04314 123 Pfam Autophagy protein Atg8 ubiquitin like 15 118 IPR004241 -
Spst3g04314 123 SUPERFAMILY Ubiquitin-like 4 118 IPR029071 -
Spst3g04314 123 Gene3D - 1 118 - -
Spst3g04314 123 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 118 IPR004241 -
Spst3g04314 123 CDD Ubl_ATG8 13 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04314 Spst-Chr3 94731297 94733709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04314 K08341 - gmx:100818620 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04314 3 94731297 94733709 Spst3g04314 3 94731297 94733709 ECH