Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04308 ATGACTTCCACTATGTTGTTGTTGATTTTGTTCATGATACTATGTATTTCACATCCCTCATTCCAGATGCTACTCTTGCCACTTACACACACTCTTTCCCAAGCTCAATTCAACACCACCCACCACCTCTTGAAATCCACCTCCGCCCGTTCCGCCGCCCGCTTCCGCCGCCAACTCTCTCTCCCCCTCTCCCCGGGCAGCGACTACACTCTCTCATTCAATCTGGGCCCCCAGGGCCAGCCCATAACCCTCTACATGGACACCGGCAGTGACTTAGTCTGGTTCCCCTGCGCCCCCTTCAAATGCATTCTCTGCGAGGGAAAGCCTAACGAGACCAACGCCTCGCCCCCAACCAACATCACCCGAAGCGTCGCCGTTTCTTGCAAGTCCCCCGCATGCTCCGCAGCGCACAACTTAGCCTCCTCTTCCGATCTCTGCGCTATGGCTCGTTGCCCTCTTGAATCTATTGAAACCTCTGATTGCTCCAATTTCAAGTGTCCACCGTTTTACTACGCATACGGCGATGGAAGCTTAATCGCGCGTATATATCAGGACACGCTCTCTATTTCTTCGCTGTCTCTCACAAACTTCACTTTCGGTTGCGCTCACACAGCCCTCGCCGAACCAACGGGTGTCGCCGGATTCGGCCGCGGTTTGCTCTCTCTCCCGGCGCAGCTAGCCACACTCTCTCCTCAACTCGGAAACCACTTTTCGTACTGCCTTGTTTCTCATTCGTTTGACTCGGAGCGAGTGCGAAAACCGAGTCCACTCATTCTCGGCCGTTACAAGGAAAAGGAGAAGATCAGTGGCAGTGGAATGGTTGAGTTCGTGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTATTTTTATACCGTTGGCTTAATCGGAATCTCCGTCGGGAAAAGGACTATTCCAGCGCCGGAGATGCTGCGACGGGTGAACAATAAAGGAGATGGTGGAGTGGTTGTGGATTCCGGCACGACGTTCACGATGTTACCGGCGGGGTTTTATAGCTCGGTGGTGGACGAGTTTGATCACCGAGTCGGGCGAGTCAACCAGCGCGCGCGTAAGATTGAGGAAAAAACTGGTCTCGCGCCGTGCTATTATTTGAACGCGGCGGCGGAAGTGCCGGCTGTGACGCTGCGTTTTGCTGGAGGCAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTTTACGAGTTTTTGGACGGAAGCGATGAGACGAAGGGGAAGAGGAGGGTGGGGTGTTTGATGCTGATGAACGGTGGAAATGAGGCTGAGTTGAGCGGTGGGCCCGGGGCCACACTGGGGAATTACCAGCAGCAAGGATTTGAGGTTGCGTATGACTTGGAAGAGCAGCGCGTGGGATTCGCCAAGAGGCATTGCGCGTCGCTTTGGGAGAGACTGAATCGCGACAAAAACTAG 1428 0.5392 MTSTMLLLILFMILCISHPSFQMLLLPLTHTLSQAQFNTTHHLLKSTSARSAARFRRQLSLPLSPGSDYTLSFNLGPQGQPITLYMDTGSDLVWFPCAPFKCILCEGKPNETNASPPTNITRSVAVSCKSPACSAAHNLASSSDLCAMARCPLESIETSDCSNFKCPPFYYAYGDGSLIARIYQDTLSISSLSLTNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPQLGNHFSYCLVSHSFDSERVRKPSPLILGRYKEKEKISGSGMVEFVYTPMLENPKHPYFYTVGLIGISVGKRTIPAPEMLRRVNNKGDGGVVVDSGTTFTMLPAGFYSSVVDEFDHRVGRVNQRARKIEEKTGLAPCYYLNAAAEVPAVTLRFAGGNSSVVLPRKNYFYEFLDGSDETKGKRRVGCLMLMNGGNEAELSGGPGATLGNYQQQGFEVAYDLEEQRVGFAKRHCASLWERLNRDKN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04308 475 PANTHER ASPARTYL PROTEASES 6 457 IPR001461 GO:0004190|GO:0006508
Spst3g04308 475 Gene3D Acid Proteases 60 260 IPR021109 -
Spst3g04308 475 Pfam Xylanase inhibitor N-terminal 69 260 IPR032861 -
Spst3g04308 475 ProSiteProfiles Peptidase family A1 domain profile. 69 459 IPR033121 -
Spst3g04308 475 FunFam aspartic proteinase nepenthesin-1 266 468 - -
Spst3g04308 475 SUPERFAMILY Acid proteases 64 468 IPR021109 -
Spst3g04308 475 FunFam Probable aspartyl protease At4g16563 59 259 - -
Spst3g04308 475 Gene3D Acid Proteases 265 468 IPR021109 -
Spst3g04308 475 CDD pepsin_A_like_plant 69 463 IPR034161 -
Spst3g04308 475 Pfam Xylanase inhibitor C-terminal 291 459 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04308 Spst-Chr3 94675752 94677179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04308 35 466 Miscellaneous Gene Families AT1G77480 25.974 3.89e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04308 - - gmx:100805699 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04308 3 94675752 94677179 Spst3g04308 3 94675752 94677179 ECH