Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04257 ATGGCCACCTTAGACGAACGCCCTTCTGCCAAAAGGTGGCTTCCTCTTGAAGCTAACCCTGACGTCATGAACCAGTTCCTTTGGGGTCTTGGCCTTCCAGTCGAGGAGGCAGAGTGCTGTGATGTTTTTGGCTTAGATGAAGAGCTTCTGGAGATGGTTCCGAAGCCCGTTCTCGCCGTGCTTTTTCTTTATCCTATTACCGCAAAGACTGAAGAAGAAAGGTTGCAACAGGAAAATGAAAAAAAGGATTATAGCAGTAAAGTGTACTTTATGAAGCAAACCGTGGGTAATGCTTGCGGTACGATAGGTCTGCTTCATGCACTTGGGAACATAACCTCTGAAGTCAAGCTTGTTGAGGGGTCGTTTTTTGACAAGTTTTTTAAATCTACTGCCAGCATGGATCCATTGCAGCGGGCTGTCTTTCTTGAGAATGACAAAGAGATGGAAGTTGCTCATTCAGTAGCAGCCAGTGGTGGTGATACAGTGGCATCAGATAATGTGGACACTCATTTCATCTGCTTTGCTTGTGTGGATGGTCAACTGTATGAGCTTGATGGAAGAAAGTCAGGACCAATATCTCATGGTGCATCCTCACCAAGTACTTTGTTAAAGGTAAATTTCTTTCGATGTTAG 633 0.4487 MATLDERPSAKRWLPLEANPDVMNQFLWGLGLPVEEAECCDVFGLDEELLEMVPKPVLAVLFLYPITAKTEEERLQQENEKKDYSSKVYFMKQTVGNACGTIGLLHALGNITSEVKLVEGSFFDKFFKSTASMDPLQRAVFLENDKEMEVAHSVAASGGDTVASDNVDTHFICFACVDGQLYELDGRKSGPISHGASSPSTLLKVNFFRC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04257 210 Coils Coil 67 87 - -
Spst3g04257 210 SUPERFAMILY Cysteine proteinases 11 205 IPR038765 -
Spst3g04257 210 Gene3D - 7 207 IPR036959 GO:0004843|GO:0006511
Spst3g04257 210 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 165 176 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 93 110 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 181 191 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 FunFam Ubiquitin carboxyl-terminal hydrolase 7 207 - -
Spst3g04257 210 CDD Peptidase_C12_UCH_L1_L3 13 204 - -
Spst3g04257 210 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 204 IPR001578 GO:0004843|GO:0006511
Spst3g04257 210 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 199 IPR001578 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04257 Spst-Chr3 94080731 94083789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04257 K05609 - gmx:100527718 399.438