Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04215 ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGACAAATCGCCGACAATTTCCGCGCCCTATCAAATGGATTTCAGAAGTTGGAGAAGATTAAGGATGCGAATAGAAAGAGCAGGCAGTTGGAAGAACTCACGGAGAAAATGCGAGAATGTAAACGGCTTATCAAGGAGTTCGATAAAGAAGTCAAAGCTTTGGAGAATAGCTTCGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATGATCAAAGAATTAAACTCATATGTTGCTTTGAAAAAGCAGTATGCTACAGATATTGAGCATAAGCGAATTGAACTCTTTGAGGGGCCAAGTGAAGGTTTTGCTGAAGAAAATGGCTTGCTAGCATCCTCAATGACAAACGAACAGTTAATGGATCATGGGAATAGGATGATGGATGATACAGATCAAGCCATTGAAAGGGGAAAGAAGATCGTTCAAGAAACAATAAATGTTGGTACAGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTAGATTCGATCCATTTCTCTTTAAAGAAAGCATCGCAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTTTAATCCTACTTTTCCTTATTGTCATTGGAGTAATTGCTATTATTGTTGTAAAGCTTGTGCACCCGGACAACAAGGACATTCGTGACATTCCAGGACTAGCTCCTCCAGTGCAGAACCGAAGACTGCTTTGGAGTCACAGTTGA 786 0.4198 MDQLSAISEDLAEIDGQIADNFRALSNGFQKLEKIKDANRKSRQLEELTEKMRECKRLIKEFDKEVKALENSFDRETNKMLNEKKQSMIKELNSYVALKKQYATDIEHKRIELFEGPSEGFAEENGLLASSMTNEQLMDHGNRMMDDTDQAIERGKKIVQETINVGTETAAALKAQTEQMSRVVNELDSIHFSLKKASQLVKEIGRQVATDKCILILLFLIVIGVIAIIVVKLVHPDNKDIRDIPGLAPPVQNRRLLWSHS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04215 261 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Spst3g04215 261 Gene3D - 133 212 - -
Spst3g04215 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Spst3g04215 261 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 24 230 - -
Spst3g04215 261 FunFam novel plant SNARE 11 133 212 - -
Spst3g04215 261 Pfam Sec20 150 232 IPR005606 GO:0005484|GO:0006890
Spst3g04215 261 SMART tSNARE_6 137 204 IPR000727 -
Spst3g04215 261 SUPERFAMILY SNARE fusion complex 132 205 - -
Spst3g04215 261 Coils Coil 31 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04215 Spst-Chr3 93607315 93612588 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04215 K08494 - gmx:100786429 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04215 3 93607315 93612588 Spst3g04215 3 93607315 93612588 ECH