Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04208 ATGCGCGGTAGTGCGCAGATGGAGAAAAGTGGGGCTATTCTGATTAAGAGGGTTAAGAAAACCATGAACAACGCCCAGGAAGTGCTCGACTATTCATTGCAGCAACAACAAGGACCCCTTTTCAACCACTCCCACATGCTATACAACAACGACAATGGAAGTAACAACATCAACAACAACAACAGCAATTCTCGTAAGAGAGGAAGAGAAGATACCGCTGTTGCCAACAACACAATCACCACAGCAGCTTCTAATGTTATTAATCCCTTTTCTTTGCAATCTCAGCCTCCACAACTTATTCATCTTTCTCAACTCCATAATCACCAACAAAATGTCGTCTCCACTGGTCTTCGTTTATCCTTTGATGACCAACAACAACAACAACAACAAAGACTACAGCTTCATCAAAATCAATCTCAACACCAACTACTACTAAATGGGTCTCACTCTTCTCCCTTCTCATCTGTATTATCCCAAGGCTTGGCTTCTCAAATCAAACAACAGCGTGATGAAATTGATCAATTCCTTCATGCCCAGGGTGAGCAACTGCGACGGGCATTGGCGGAGAAGAGACAGAGACATTACAACGCGCTGCTTAGCGCGGCGGAGGAAGCGGTGGCACGGCGGCTCAGAGAGAAGGAGGCGGAAGTGGAGAAGGCTACCCGCAAGAACGCGGAGCTAGAAGCACGGGCTGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCGAAGGCCCGGGCCCAGGAAGCAACCGCGGCCACCCTCCAGGCCCAACTGCAGCATACCATAATGTGTCAGGGCGGCGATGAAGCTATTGCCGCCGGTGTGTCGTGCGCGGCGGTGGAAGGTCAGGCTGAGGACGCGGAGTCAGCCCACATAGACCCCGAGCGTTTGGTGTTAGCGGCAGCGCGTCCCAAATGCAGAGGGTGTACAAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGCATCTGTACAGAATGCGATGCGCATTTTCGAGCATGCCCAGTTTGTCTTACACCCAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1065 0.5127 MRGSAQMEKSGAILIKRVKKTMNNAQEVLDYSLQQQQGPLFNHSHMLYNNDNGSNNINNNNSNSRKRGREDTAVANNTITTAASNVINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDQQQQQQQRLQLHQNQSQHQLLLNGSHSSPFSSVLSQGLASQIKQQRDEIDQFLHAQGEQLRRALAEKRQRHYNALLSAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAATLQAQLQHTIMCQGGDEAIAAGVSCAAVEGQAEDAESAHIDPERLVLAAARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04208 354 PIRSF SBP1_RNase_bind 7 354 IPR017066 -
Spst3g04208 354 Pfam Zinc finger, C3HC4 type (RING finger) 306 346 - -
Spst3g04208 354 MobiDBLite consensus disorder prediction 51 70 - -
Spst3g04208 354 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 50 351 IPR017066 -
Spst3g04208 354 Coils Coil 203 244 - -
Spst3g04208 354 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 287 353 - -
Spst3g04208 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 354 IPR013083 -
Spst3g04208 354 ProSiteProfiles Zinc finger RING-type profile. 307 341 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04208 Spst-Chr3 93546899 93554025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04208 307 343 Miscellaneous Gene Families AT2G21380 37.838 4.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04208 K19042 - gmx:100788122 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04208 3 93546899 93554025 Spst3g04208 3 93546899 93554025 ECH
Spst3g04208 3 93546899 93554025 Spst3g04208 3 93546899 93554025 PCT