Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04199 ATGGCGCCAGTGTCGGCTCTCGCAAAGTACAAGCTTGTGTTCTTGGGCGATCAGTCCGTTGGCAAAACCAGCATCATCACTCGCTTCATGTACGACAAATTCGACAACACTTATCAGGCTACAATCGGTATCGACTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTAGACTGCAGTTGTGGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCATCTGTTGCTGTTATTGTTTATGATGTTGCAAGCCGTCAGACTTTCCTAAACACATCAAGGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGTGATGTTATTGTTGTTCTTGTTGGAAACAAAACTGATCTTGTGGATAAAAGGCAAGTATCTACAGAGGAGGGGGAAGAAAAGTCCCGAGAGCTGAACGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGCTTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCAGGAATGGAAACATTATCTACCTCAAAACAGGAAGATATGGTCGATGTGAACCTGAGATCTTCTGGTGGTCATGATTCCCAATCTGAGGCGGGTGGATGTGCTTGCTAA 621 0.4332 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSRWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGEEKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTSKQEDMVDVNLRSSGGHDSQSEAGGCAC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04199 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Spst3g04199 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Spst3g04199 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Spst3g04199 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Spst3g04199 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Spst3g04199 206 Gene3D - 6 200 IPR027417 -
Spst3g04199 206 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Spst3g04199 206 CDD Rab6 10 170 - -
Spst3g04199 206 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Spst3g04199 206 SMART ran_sub_2 15 206 - -
Spst3g04199 206 PANTHER RAS-RELATED PROTEIN RAB 10 178 - -
Spst3g04199 206 SMART ras_sub_4 7 173 - -
Spst3g04199 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Spst3g04199 206 SMART rab_sub_5 10 173 - -
Spst3g04199 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 176 IPR027417 -
Spst3g04199 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Spst3g04199 206 FunFam Probable Ras-related protein Rab-6A 6 202 - -
Spst3g04199 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
Spst3g04199 206 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04199 Spst-Chr3 93410408 93415003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04199 10 168 EF-hand Containing Proteins AT3G63150 23.636 6.42e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04199 K07893 - gmx:100790511 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04199 3 93410408 93415003 Spst3g04199 3 93410408 93415003 ECH
Spst3g04199 3 93410408 93415003 Spst3g04199 3 93410408 93415003 PCT