Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04177 ATGGCCACGATTCTTGAGAGTGAAAAAGACCCTCTACAACCACCTTCACGTGGATTTCTGGAGACAGTAGAAGAAATCACCAGAGTCTACAGGTCACTGCCACCTCGACCTTCCATTGAAGAGGTGGAAGCTGCCACGTCCACTGTGGATACCCTCAACAACGAGGAACAAACCAAACTCCACGAAATCTCAATGCAACAATCTCCTCCCGACGTCCCTGAGGACCTCTTCTCTGTCCTGCAGCAACTCAAGAAGACCATGGTCTTGTTCCACACCAACCAACAGAGGAGAGAGGCTCTTCAACTTCTCGAGCTCGAAAAGATGTTCCAAACCTTTGGTGATCTCATTCAGAGGGCTTCCGAATTGGTCTCTGGAGATACCCAGAAGCAAAACCTTCCCACTTTCACCGAAGAAAACGTTATGACCACTGACCAAAGTCAAATTTTGGTGAAGGAAGAGGAAGAATCACAGAAGAATGATTTCCAAGTGATAAAGCCTTCTTTGTCTGCAGGCGAAGGAAGCACTGAGAAATTAAGTTTAATGAAAGTTGCTACTGTTATTGAAAGTTGTGCTGGTAGTGGAGCTACAACCCTTGAACTTAGAGGGAAGTTGGTGGATCAGATGGAATGGTTGCCGGTGTCAATTGGGAAATTATCTGATGTCACTGACATGGACCTATCCGAAAACAGAATCATGGCTCTTCCAACAACTATTATTGGTCTCAAGGCCTTAACAAAGCTTGATCTTCACTCAAACCAACTCATAAACCTTCCCCATTCATTTGGTGAACTGATAAACCTTGTTGATCTTGACCTCCATGCTAACAGATTGAAATCACTTCCTGCTACTTTCGGAAACTTGACAAACCTCATTGATCTAGACTTGAGCTCAAATGGGTTCACAAGTTTACCAGAGACAATCGGGAATTTGAGCAGCCTGAAGAGATTGAATGCTGAGACCAACGAGCTTGAGGAACTGCCTTACACAATTGGAAATTGTTCATCACTATCTGAGCTCAGGTTAGATTTCAATCAGCTCAAGGCCATACCTGAGGCAATTGGGAAGCTTGAATGGTTGGAGATCCTCACTGTGCACTATAATAGAGTCAAGAGGTTGCCTTCCACAATGGGTAATCTATGCAATTTAAAGGAACTCGATGTTAGCTTTAATGAACTCGAATTTGTACCAGAGAGCCTGTGTTTTGCAACTAATTTAAAGAAATTAAACTTGGGAAAGAACTTTGCGGACCTAAGAGCCTTGCCAAGATCAATTGGAAATCTTCAAATGCTTGAGGAGTTGGATATAAGCGATGATCAAATAAAAGCTTTACCAGAGTCTTTCAGGTTCTTATCCAAGTTGAGAGTTTTTAGAGCTGATGAGACCCCCCTTGAGGTGCCACCGAGAGAATTGGTCAAATTGGGCGCTCAGGAAGTTGTGCACTATATGGCTGATTTTGACACCAAGAAGGATGCAAAACTTGTGCCATCAAAGAAGAAAAGGAAGGGGTTTGGATTCCGGGTTTTCTCCCTATTTTGTTCTAAGCTTGAATGA 1551 0.4339 MATILESEKDPLQPPSRGFLETVEEITRVYRSLPPRPSIEEVEAATSTVDTLNNEEQTKLHEISMQQSPPDVPEDLFSVLQQLKKTMVLFHTNQQRREALQLLELEKMFQTFGDLIQRASELVSGDTQKQNLPTFTEENVMTTDQSQILVKEEEESQKNDFQVIKPSLSAGEGSTEKLSLMKVATVIESCAGSGATTLELRGKLVDQMEWLPVSIGKLSDVTDMDLSENRIMALPTTIIGLKALTKLDLHSNQLINLPHSFGELINLVDLDLHANRLKSLPATFGNLTNLIDLDLSSNGFTSLPETIGNLSSLKRLNAETNELEELPYTIGNCSSLSELRLDFNQLKAIPEAIGKLEWLEILTVHYNRVKRLPSTMGNLCNLKELDVSFNELEFVPESLCFATNLKKLNLGKNFADLRALPRSIGNLQMLEELDISDDQIKALPESFRFLSKLRVFRADETPLEVPPRELVKLGAQEVVHYMADFDTKKDAKLVPSKKKRKGFGFRVFSLFCSKLE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04177 516 SUPERFAMILY L domain-like 186 464 - -
Spst3g04177 516 Gene3D Ribonuclease Inhibitor 173 489 IPR032675 -
Spst3g04177 516 PANTHER - 210 413 - -
Spst3g04177 516 FunFam Plant intracellular Ras-group-related LRR protein 4 177 485 - -
Spst3g04177 516 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Spst3g04177 516 SMART LRR_bac_2 379 398 - -
Spst3g04177 516 SMART LRR_bac_2 333 352 - -
Spst3g04177 516 SMART LRR_bac_2 427 446 - -
Spst3g04177 516 SMART LRR_bac_2 287 306 - -
Spst3g04177 516 SMART LRR_bac_2 356 375 - -
Spst3g04177 516 SMART LRR_bac_2 241 260 - -
Spst3g04177 516 SMART LRR_bac_2 310 329 - -
Spst3g04177 516 SMART LRR_typ_2 287 309 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 427 449 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 218 240 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 310 333 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 334 356 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 264 286 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 241 263 IPR003591 -
Spst3g04177 516 SMART LRR_typ_2 379 402 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04177 Spst-Chr3 93160363 93162388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04177 158 442 Receptor kinase-like Gene Family AT3G11080 30.744 1.63e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04177 - - gmx:100798442 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04177 3 93160363 93162388 Spst3g04177 3 93160363 93162388 ECH