Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03929 ATGTCAACGTGCACAACCCCCAAGAAGGGAGAGATCAACGGGCTCATGGAAGCTTTTCATCACTTGGATGGTGATGGAGATGGTAAAATCTCGGCCTATGAGCTAAGGTCGTATTTAGAGTCCATTGGGGAGCACATGTCTCACGAGGAGGTTGAAGGGGTGATCCATGACCTCGATTCCGATGGGGACAACATGTTGGACTTGGACGATTTCACCAAGTTGATGAAAAGGGATGGTGGTGATGAGGGGGATTTGAGAAAGGCTTTTGAGATGTTTGTGTTGGAGAAAGAAGGGTGTGGTGATTGCATCACCCCAAAAGGGTTGCAAAGGATGCTGCACCGTCTTGGAGATGACAAGTCCTATGATGAGTGTGTGGCCATGATCGGTGCCTTCGACATTGATCACAACGGTGTCCTTGATTTCAATGAGTTTTACCAAATGATGGCCTAG 450 0.48 MSTCTTPKKGEINGLMEAFHHLDGDGDGKISAYELRSYLESIGEHMSHEEVEGVIHDLDSDGDNMLDLDDFTKLMKRDGGDEGDLRKAFEMFVLEKEGCGDCITPKGLQRMLHRLGDDKSYDECVAMIGAFDIDHNGVLDFNEFYQMMA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03929 149 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
Spst3g03929 149 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Spst3g03929 149 CDD EFh 84 149 IPR002048 GO:0005509
Spst3g03929 149 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Spst3g03929 149 SUPERFAMILY EF-hand 4 148 IPR011992 -
Spst3g03929 149 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Spst3g03929 149 FunFam Calmodulin-2 A 7 149 - -
Spst3g03929 149 Pfam EF-hand domain pair 15 76 IPR002048 GO:0005509
Spst3g03929 149 Pfam EF-hand domain pair 100 148 IPR002048 GO:0005509
Spst3g03929 149 ProSiteProfiles EF-hand calcium-binding domain profile. 119 149 IPR002048 GO:0005509
Spst3g03929 149 Gene3D - 79 149 - -
Spst3g03929 149 PANTHER CALCIUM BINDING PROTEIN 15 75 - -
Spst3g03929 149 Gene3D - 4 78 - -
Spst3g03929 149 CDD EFh 15 76 IPR002048 GO:0005509
Spst3g03929 149 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Spst3g03929 149 SMART efh_1 123 149 IPR002048 GO:0005509
Spst3g03929 149 SMART efh_1 50 78 IPR002048 GO:0005509
Spst3g03929 149 SMART efh_1 14 42 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03929 Spst-Chr3 89529587 89530036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03929 15 149 EF-hand Containing Proteins AT3G50770 54.225 5.15e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03929 K13448 - gmx:100306370 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03929 3 89529587 89530036 Spst3g03929 3 89529587 89530036 ECH