Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03917 ATGTGCTGTGTGCGGTGCCTGCCAGCTGCGAAACCCATCCGAAATCTCTTCCTTCTTCCTCCTCTCCTCTTCTCCATCTCTGGACTTTTCTCAACGCAGATTTCCCTCTCTTTCACGACGATGATTAAACTTTTTAAAGTGAAGGAGAAGCAGAGAGAACAAGCAGAGAATGCAAGCGGAGGACCACCTGTTAAGAAGCAATCAGCTGGGGAGTTGCGTCTTCACAAAGACATAAGTGAGTTGAATCTGCCAACATCTTGTACCATACGATTTCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATCCAACCTGATGAAGGATATTACATGGGTGGCACATTTTTGTTTACTTTCCAAGTGTCTCCCATCTATCCACACGAAGCACCAAAGGTTAAGTGCAAGACGAAGGTCTACCATCCAAATATAGACTTGGAAGGAAATGTTTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAATACTGTCATCTATGGATTATATCATCTCTTCACGGAACCAAATTATGAGGATCCGCTTAATCATGAAGCTGCTGCGGTCTTGAGAGAGAATCCGAAGCTGTTTGAGTCTAATGTGAAGAGAGCTATGGCTGGTGGGTATGTGGGGCAAACTTCTTTCACTCGCTATGCGATGGGAAAGGTATCGATTCTTTGTTGGGATCCTTCCTTTCTTCAAACGGAACGAACATATATAGAATTGGAGCGATTCCTTAAAATCCTTTCTGGATATTTCTTAATGTGCCGACTATTCATGGAACGTGAGAAGCAGATGAATAATCATCTGCTTCTAGAAGAAATCAAAGAATTTCTTGGAAATTCTGCAAGAGCCACTCGTTCTTTTTTCTCTGACAAATGGTCAGAACTTCATCTGGTTTTCTTCATGTGGTTCATTGAACCTGTGTGGAAAGAACAGAAAAAAGGAACTTTAACCATAACAGGTGGGAAAGCTGAGTCGTAA 996 0.4217 MCCVRCLPAAKPIRNLFLLPPLLFSISGLFSTQISLSFTTMIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPTSCTIRFPNGKDDLMNFEVSIQPDEGYYMGGTFLFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHEAAAVLRENPKLFESNVKRAMAGGYVGQTSFTRYAMGKVSILCWDPSFLQTERTYIELERFLKILSGYFLMCRLFMEREKQMNNHLLLEEIKEFLGNSARATRSFFSDKWSELHLVFFMWFIEPVWKEQKKGTLTITGGKAES 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03917 331 SUPERFAMILY UBC-like 58 216 IPR016135 -
Spst3g03917 331 Pfam Plant protein of unknown function (DUF825) 226 304 IPR008543 -
Spst3g03917 331 SMART ubc_7 72 214 - -
Spst3g03917 331 Pfam Ubiquitin-conjugating enzyme 73 208 IPR000608 -
Spst3g03917 331 FunFam NEDD8-conjugating enzyme Ubc12 65 224 - -
Spst3g03917 331 CDD UBCc 73 207 IPR000608 -
Spst3g03917 331 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 97 202 - -
Spst3g03917 331 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 141 156 IPR023313 -
Spst3g03917 331 Gene3D Ubiquitin Conjugating Enzyme 65 224 IPR016135 -
Spst3g03917 331 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 69 214 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03917 Spst-Chr3 89279343 89293754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03917 K10579 - gmx:100813186 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03917 3 89279343 89293754 Spst3g03917 3 89279343 89293754 ECH
Spst3g03917 3 89279343 89293754 Spst3g03917 3 89279343 89293754 PCT