Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03897 ATGTTCCTTCTTAGAAGGCAAGGCCAGAATCAGCAGGAGAATGATTCCTCAAAACAAGATACAAAGGTGAATGATCTCAGGGCTGCCCTTGGGCCCCTCCCTGGTCGTCGATTACAGTATTGCACGGATGCGTGTCTAAGGAGATATTTAGAAGCAAGGAATTGGAATGTTGATAAAGCCAAGAAAATGGTGGAGGAATCACTCAAGTGGCGGGAAACTTATAAGCCAGAAGAAATTCGTTGGGCTGAAGTAGCACATGAGGGTGAGACAGGCAAAGTCTCTAGAGCTAACTTTCATGATCGACATGGGAGGACCGTGCTTATTATGAGGCCAGGGATGCAGAACACAACATCTGCCGAAGATAATATCAGGCATTTAGTCTATCTGATGGAAAATGCTATCCTAAATCTTCCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTACACAGGATTATCACTTAATACAAATGTTTCTGTTAAAACAGCTCGTGATATTATTTACATTTTACAAAACCACTATCCGGAAAGGCTTGCTATTGCTTTTCTGTACAATCCACCAAGAATTTTCCAGGCTTTCTGGAAGGCCGTCAAGTTCTTCCTGGATCCCAAGACAGTCCAGAAGGTTAAGTTTGTTTATCCGAATAATAAGGACAGTGTGGAGCTGATGAGATCATTCTTCGACCTAGATAACCTTCCAAGTGAATTTGGGGGCAAAACAAGTTTAAAGTATGACCATGAAGAGTTCTCACGGTTGATGACCGAGGATGACGCGAAAACTGCCAAGTTCTGGGGACTTGATGAGAAGCCCTTCAACCCTCCTAAGAAAGGGCATGCTGGAGCAGAGGTGGCACCAGAACCCGTGTCTGCTCAGACAGTAGTTAGTTAG 891 0.4388 MFLLRRQGQNQQENDSSKQDTKVNDLRAALGPLPGRRLQYCTDACLRRYLEARNWNVDKAKKMVEESLKWRETYKPEEIRWAEVAHEGETGKVSRANFHDRHGRTVLIMRPGMQNTTSAEDNIRHLVYLMENAILNLPEGQEQMSWLIDYTGLSLNTNVSVKTARDIIYILQNHYPERLAIAFLYNPPRIFQAFWKAVKFFLDPKTVQKVKFVYPNNKDSVELMRSFFDLDNLPSEFGGKTSLKYDHEEFSRLMTEDDAKTAKFWGLDEKPFNPPKKGHAGAEVAPEPVSAQTVVS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03897 296 MobiDBLite consensus disorder prediction 270 296 - -
Spst3g03897 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Spst3g03897 296 MobiDBLite consensus disorder prediction 1 17 - -
Spst3g03897 296 CDD SEC14 99 240 IPR001251 -
Spst3g03897 296 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Spst3g03897 296 SMART sec14_4 87 242 IPR001251 -
Spst3g03897 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Spst3g03897 296 Pfam CRAL/TRIO domain 93 239 IPR001251 -
Spst3g03897 296 Pfam CRAL/TRIO, N-terminal domain 42 65 IPR011074 -
Spst3g03897 296 Gene3D - 4 271 IPR036865 -
Spst3g03897 296 SUPERFAMILY CRAL/TRIO domain 82 255 IPR036865 -
Spst3g03897 296 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g03897 296 PANTHER GH16843P 10 270 - -
Spst3g03897 296 SUPERFAMILY CRAL/TRIO N-terminal domain 10 82 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03897 Spst-Chr3 88970988 88972949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03897 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 26.794 8.07e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03897 K26544 - gmx:100782334 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03897 3 88970988 88972949 Spst3g03897 3 88970988 88972949 ECH