Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03895 ATGATAAAAGCAGTGCTGGTGATGAACACGCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTAAGCCCGTGGAGCAGCAGCAGGAAGCTATTCGCAATGTGTTTTCAGTATTATGCAGTAGACCTGAAAATGTCAGCAATTTTGTGGATGCTGAATCCTTCTTTGGCCCGGACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTTGTGTTCATTTTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGTCTTTGTTGAAACATTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGATGCATACTATACTAGATGAGATCATTCTTGGAGGCCAGGTGTTGGAGACAAGTTCGACCGAGGTTATGAAAGCTATTGAAGAAATAGCAAGGCAATACGCTTCTACTATATCTGCCTGCCCAACAGTTATGGTATCTATCAAATTGATACGTCATTCTAGTAAATACGAAACTAAAGGCTTGAAGCAGCGTCCAATGCAATCAATCTTGTTCCAAAATCTGTTTCAGGATGGAGGGCGCGGTAAAATAATTTCAATCAAACTTCCGAACTCTGGAGTGAGTGCTCCTAATTGGTACAACGACTGA 648 0.4105 MIKAVLVMNTQGKPRLAKFYEFKPVEQQQEAIRNVFSVLCSRPENVSNFVDAESFFGPDSRLVYKHFATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDIVFNYSKMHTILDEIILGGQVLETSSTEVMKAIEEIARQYASTISACPTVMVSIKLIRHSSKYETKGLKQRPMQSILFQNLFQDGGRGKIISIKLPNSGVSAPNWYND 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03895 215 Pfam Clathrin adaptor complex small chain 1 143 IPR022775 -
Spst3g03895 215 Gene3D - 1 154 - -
Spst3g03895 215 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Spst3g03895 215 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 145 IPR016635 GO:0015031
Spst3g03895 215 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
Spst3g03895 215 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Spst3g03895 215 FunFam AP complex subunit sigma 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03895 Spst-Chr3 88955306 88964588 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03895 K12399 - gmx:100306517 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03895 3 88955306 88964588 Spst3g03895 3 88955306 88964588 ECH