Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03888 ATGAGTTTCAGGGAAGAGACTGGAGATGCCAGGGATCTTCAGAAACCGTTTCTGCACACCGGGAGTTGGTACAAGATGGGTTCCAGGCAGTCCAGCATCATGGGATCCTCCACTCAGGTCATCCGCGACGGCGCTGTCTCCGTCCTCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATCCAATTCGGCTTCACATGTGGGTATTCTTCTCCAACTCAAGGGGCTATAGTACGCGATCTAAAGCTCTCAGTTTCGGAGTTCTCTTTGTTTGGATCTTTGTCCAATGTGGGCGCGATGGTGGGGGCTATAGCAAGTGGTCAGATAGCTGAATACATAGGGCGCAAAGGGTCGTTGATGATTGCTGCAATTCCCAATATAATAGGGTGGCTTGCTATTTCTTTCGCCAAAGATTCCTCGTTTTTGTTTATGGGGAGGTTGTTGGAAGGTTTTGGCGTAGGGATCATCTCTTATGTGGTGCCTGTATATATAGCTGAGATTGCACCTCAAAACATGAGAGGTAGCCTTGGATCAGTGAACCAGCTCTCTGTTACAATCGGCATTTTGCTGGCTTATTTGTTGGGCCTTTTTGTCAACTGGAGAGTGCTTGCAATTCTAGGAGTTTTGCCTTGTACAGTATTAATACCTGGATTATTTTTCATTCCAGAATCCCCCAGATGGTTGGCCAAGATGGGGATGACAGATGAGTTTGAGACTTCTTTGCAAGTGTTACGAGGATTTGACACCGACATATCTGTGGAAGTGCATGAAATTAAGAGATCTGTGGCTTCAACAGGAAAAAGAGCTGCAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCCTTAATGGTTGGAATTGGATTGCTTGTTCTTCAGCAATTAACTGGCATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAACGCAGGAATTTCAGCTAGTAATGCTGCTACAGTTGGACTTGGTGCCATTCAGGTGCTAGCAACTGGAATTGCCACATGGTTGGTGGACAAAAGTGGGCGGAGGCTGCTTTTAATAATATCCTCATCTGTAATGACAATTAGCCTTGTCATTGTTTCAACAGCATTCTATCTAGAGGGGGTTGTATCAGAGGATTCACAACTATTCAGCATTTTGGGAATACTTTCTGTTGTTGGTCTTGTGGTTATGGTGATCGGGTTCTCTCTAGGCCTCGGACCCATCCCTTGGCTGATAATGTCTGAGATACTTCCAGTGAATATAAAGGGCCTTGCTGGAAGTATAGCGACAATGGGAAATTGGCTGTTTGCGTGGGTGATCACGTTGACTGCTAACTTACTTTTAAATTGGAGCAGTGGAGGGACATTTACAATCTACGCAGCAGTATCTGCCATAACTATTGCTTTTATAGTGAAATTTGTCCCTGAGACCAAAGGAAGAACATTGGAAGAAATTCAATCAGAGGATTCAAACAGAAATTTGGGTTCAACACTAGCTATGCCTTTGGGGGAGGACTATGAGGAGGCTAGGAACCTTAGAATACCTTTCGTCAACAACAACGCAGGAAATGACAACCTCTTTGTTGTGCTATGCGTTCTCCTCGTTGCGTTGGGTCCTATCCAATTCGGTTTCACGTGTGGTTATTCATCTCCAACACAAGCTGAAATGATTCGCGATCTTAATCTCTCAATTTCAAGGTTTTCACTGTTTGGATCTTTATCTAACATTGGTGCAATGGTGGGAGCAACAGTCAGTGGTCAAATAGCAGAATACTTTGGACGTAAAGGGAGACCCACACATAATAAGTCACTAATAGTCGCAGCAGTCCCAAATATATTTGGATGGCTCGCCATTTCTGTAGCGAAAGAAGAAGAGACGAAGGAGAAGGAGGAGGAAGAGGACTTGTTTGAAGCTATTCATATTACTCCATTTGAATTTGGTCCCAGTGAGGTGGAATACATGTGGTGTGGGAGACTTGTTGAAGGATGA 1980 0.4449 MSFREETGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGFTCGYSSPTQGAIVRDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGSLGSVNQLSVTIGILLAYLLGLFVNWRVLAILGVLPCTVLIPGLFFIPESPRWLAKMGMTDEFETSLQVLRGFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLTGINGVLFYSTTIFANAGISASNAATVGLGAIQVLATGIATWLVDKSGRRLLLIISSSVMTISLVIVSTAFYLEGVVSEDSQLFSILGILSVVGLVVMVIGFSLGLGPIPWLIMSEILPVNIKGLAGSIATMGNWLFAWVITLTANLLLNWSSGGTFTIYAAVSAITIAFIVKFVPETKGRTLEEIQSEDSNRNLGSTLAMPLGEDYEEARNLRIPFVNNNAGNDNLFVVLCVLLVALGPIQFGFTCGYSSPTQAEMIRDLNLSISRFSLFGSLSNIGAMVGATVSGQIAEYFGRKGRPTHNKSLIVAAVPNIFGWLAISVAKEEETKEKEEEEDLFEAIHITPFEFGPSEVEYMWCGRLVEG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03888 659 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 475 IPR020846 GO:0022857
Spst3g03888 659 CDD MFS_GLUT6_8_Class3_like 49 481 IPR044775 GO:0008643|GO:0051119
Spst3g03888 659 Gene3D MFS general substrate transporter like domains 43 486 IPR036259 -
Spst3g03888 659 Pfam Sugar (and other) transporter 52 484 IPR005828 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 FunFam sugar transporter ERD6-like 6 42 485 - -
Spst3g03888 659 NCBIfam sugar porter family MFS transporter 44 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 Gene3D MFS general substrate transporter like domains 525 624 IPR036259 -
Spst3g03888 659 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 PRINTS Sugar transporter signature 411 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 PRINTS Sugar transporter signature 388 409 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 PRINTS Sugar transporter signature 142 161 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 SUPERFAMILY MFS general substrate transporter 50 484 IPR036259 -
Spst3g03888 659 SUPERFAMILY MFS general substrate transporter 525 614 IPR036259 -
Spst3g03888 659 ProSitePatterns Sugar transport proteins signature 2. 147 172 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 ProSiteProfiles Major facilitator superfamily (MFS) profile. 528 659 IPR020846 GO:0022857
Spst3g03888 659 ProSitePatterns Sugar transport proteins signature 1. 105 122 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst3g03888 659 PANTHER - 520 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03888 Spst-Chr3 88904024 88912991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03888 497 620 Organic Solute Cotransporters AT1G75220 53.846 3.36e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03888 K03444 - gmx:100813399 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03888 3 88904024 88912991 Spst3g03888 3 88904024 88912991 ECH