LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03872	ATGGTGAAGCTACTTTCTTCAACTGCAACTGTTCCCACCCAACAATTCCTCTTCCAACTTCAATACTCTCTCTTTCCCGTTTGCGCCTTCGCAACCTTCCACCGGAACCGCACCCAATCCGTCTCCCACCTTTCTTGCAGAAGCAGACACAATCGCTTCCAAGCATTCCACGTCAAACAAGACCAGCTCTGGGTCAGCGAAGAAGAGCTGAAACTAAAATTAAAAGAAGTAGAAGAAGAACAAGAACAAGAAGATTCGTATTTGGACGATGATGACTCGTCGTTCTTGTCCCTCAGCGACAAGCCCGACCGGAACACCACCTTGCTCGACGACTACGAGACAGAGGAACTCGACTTTGATGTCGGCCCCGACCACCGGAGCGGATATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTTGGTCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACAACCAGGCATCGAATTCTGTGTATATGTTCAGGGACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTGCAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCAGCAGTTAATGCTGACTGTGTATTGGTTCTGGTGGATGCACGTAAAGCTCCAGAAAAAATTGATGGATTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAACCCCCCACTCTATTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGCGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGATGTTGATGAGGTTATACCAGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTAAAGGACTGGATACTGTCAAAGATTCCCAATGGACCAGCTTATTATCCAAAGGATATAGTCAGTGAGCATCCAGAAAGATTTTTTGTGGCTGAAATTGTTAGAGAAAAAATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAATTATAAAGCTCGGCCAAATGCAAAAGATTACATACAAGTAGAGATTTTGGTTGAGAAAAACTCACAGAAGATGATCCTTATTGGAAAAGAGGGAAAGGCTTTGAAACTGCTTGCAACGGCTGCCCGCCTTGATGTTGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGATGAAGGGCTTCTAAAGCACTATGGTTATGGGGGTCAGATACGCGTTATATAA	1278	0.4257	MVKLLSSTATVPTQQFLFQLQYSLFPVCAFATFHRNRTQSVSHLSCRSRHNRFQAFHVKQDQLWVSEEELKLKLKEVEEEQEQEDSYLDDDDSSFLSLSDKPDRNTTLLDDYETEELDFDVGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHMLDSMMMKNVRSAAVNADCVLVLVDARKAPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTDVDEVIPVSAKYGQGVEDVKDWILSKIPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKDYIQVEILVEKNSQKMILIGKEGKALKLLATAARLDVEDFLQKKVYLEIEVKVRENWRQDEGLLKHYGYGGQIRVI	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03872	425	Pfam	50S ribosome-binding GTPase	130	247	IPR006073	GO:0005525
	Spst3g03872	425	NCBIfam	GTPase Era	128	401	IPR005662	GO:0003723\|GO:0005525
	Spst3g03872	425	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	130	327	IPR027417	-
	Spst3g03872	425	CDD	KH-II_Era	316	402	-	-
	Spst3g03872	425	Pfam	KH domain	330	407	IPR004044	GO:0003723
	Spst3g03872	425	CDD	Era	125	293	IPR030388	GO:0005525
	Spst3g03872	425	Gene3D	-	308	422	IPR015946	-
	Spst3g03872	425	Gene3D	-	123	307	IPR027417	-
	Spst3g03872	425	Hamap	GTPase Era [era].	125	418	IPR005662	GO:0003723\|GO:0005525
	Spst3g03872	425	FunFam	GTPase Era	123	306	-	-
	Spst3g03872	425	NCBIfam	small GTP-binding protein domain	130	289	IPR005225	GO:0005525
	Spst3g03872	425	ProSiteProfiles	Type-2 KH domain profile.	327	404	IPR004044	GO:0003723
	Spst3g03872	425	PANTHER	GTPASE ERA	78	410	IPR005662	GO:0003723\|GO:0005525
	Spst3g03872	425	FunFam	GTPase Era	307	421	-	-
	Spst3g03872	425	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	303	418	IPR009019	GO:0003723
	Spst3g03872	425	ProSiteProfiles	Era-type guanine nucleotide-binding (G) domain profile.	126	296	IPR030388	GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03872	Spst-Chr3	88777572	88781581	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03872	K03595		-	gmx:100815820	684.485

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g03872	3	88777572	88781581	Spst3g03872	3	88777572	88781581	ECH