Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03863 ATGTCGTTTTTCTCCTCATTCACGGCCAATTCCAACCTCGCCACCGCCAAGGCCATCCTCTCCACGGCCGCCTCGGTGGCCGCCACGGCAATGGTGATCCGCTCGGTGGCCAACGAGCTCCTCCCGCAGGAGCTCCTGTCGTACGTCACCGGCGGACTCCGCAGAGCGCTATCGCGGTACTCGTCGGAAATAACGATGGTCATCGAGGAGTTCGACGGCCTCGCGAGCAACCAAATCTACGAGGCGGCTGAGACCTACCTGGGCACTAAAATCTCCCCCACCACGCAGAGACTCAAGGTCACCAAAACCGAAACCGACGACACCTTCGCCCTCACAATGGAGGGCAACGAGATCGTCACCGACGTGTTTAACGGCGTCAAGTTTAACTGGCTCCTCGTTTGCCGTCAAGTGGAGACCCGACACTTTCACAACCCGCGCGACCTGAACTCCACTTTGAAATCGGAGGTTCGGTCCTTGGAACTCACCTTCCACAAGAAGCACAAGCACACGGTCCTCAACGCCTACCTTCCCTTCATTCTGAGGGAGGCCAAGTCCTTGAAGCAGGAGACCAAGGCCGTGAAGATCTTCACTGTGGATTACAATAACATGTATGGGAACCCCAACGACACCTGGTCGGGGATCAAACTGGACCACCCCGCCACGTTTGACACGCTGGCGCTGGAGCGTGACGTGAAGGAGTTTGTTATAAGGGATTTGGAGAGGTTTGTGGCGAGAAAGGAGTATTATAGACAAGTTGGGAAGGCGTGGAAGAGAGGCTACTTGCTCTATGGACCTCCCGGTACAGGGAAATCCAGTTTGATTGCTGCCATGGCTAATTACTTGCGGTTTGATATCTATGACTTGGAGCTCACCGAGTTGCAATGCAATTCCGAACTCAGGAGGCTGCTCATTGCCATGGCTAATAGGTCCATTCTTGTTGTTGAGGACATTGATTGCACTATTGAGTTTCACGACCGCAGAACGGAGTCCAGAGCCTCCTCTCCTGGAAAAAAAGACAGACAGGTTACCCTGTCGGGGTTGCTGAATTTCATTGACGGATTATGGTCAAGTTGTGGGGATGAGAGGATTATAGTGTTCACAACAAACCACAAGGACAAGCTTGACCCAGCGTTACTCCGCCCTGGTCGCATGGATGTTCATATTCACATGTCCTATTGCACTCCCTGTGGTTTTAGACAGCTAGCTTTCAATTACCTGGGAATCAAAGAACATTCTCTCTTTCCACAGATTGAGGAAGAAATTCAGAAAACCCAGGTGACTCCAGCTGAAGTGGCAGAACAGCTTCTGAAGAGCAGCGACATTGAAACTTGTCTAAAGCGGCTTATAGATTTCCTAATAAAGAAGAAAGAAACACAGGAACTGGAGGTTAAAAGGAAGGAACAGGAGGCCAAAGATAAAGAGGAGCTTGTTGCTGGTGGTAAAGGAGAAGAGGGTGATGATGACGAAAAGAAAAGTACAACCGAGTTAAACAACAACACCTGCTGA 1506 0.5113 MSFFSSFTANSNLATAKAILSTAASVAATAMVIRSVANELLPQELLSYVTGGLRRALSRYSSEITMVIEEFDGLASNQIYEAAETYLGTKISPTTQRLKVTKTETDDTFALTMEGNEIVTDVFNGVKFNWLLVCRQVETRHFHNPRDLNSTLKSEVRSLELTFHKKHKHTVLNAYLPFILREAKSLKQETKAVKIFTVDYNNMYGNPNDTWSGIKLDHPATFDTLALERDVKEFVIRDLERFVARKEYYRQVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTELQCNSELRRLLIAMANRSILVVEDIDCTIEFHDRRTESRASSPGKKDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIHMSYCTPCGFRQLAFNYLGIKEHSLFPQIEEEIQKTQVTPAEVAEQLLKSSDIETCLKRLIDFLIKKKETQELEVKRKEQEAKDKEELVAGGKGEEGDDDEKKSTTELNNNTC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03863 501 Gene3D - 389 459 - -
Spst3g03863 501 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Spst3g03863 501 SMART AAA_5 256 394 IPR003593 GO:0016887
Spst3g03863 501 MobiDBLite consensus disorder prediction 462 494 - -
Spst3g03863 501 Coils Coil 449 476 - -
Spst3g03863 501 PANTHER BCS1 AAA-TYPE ATPASE 21 460 - -
Spst3g03863 501 CDD RecA-like_BCS1 235 390 - -
Spst3g03863 501 Pfam ATPase family associated with various cellular activities (AAA) 261 391 IPR003959 GO:0005524|GO:0016887
Spst3g03863 501 MobiDBLite consensus disorder prediction 462 501 - -
Spst3g03863 501 Pfam Domain associated at C-terminal with AAA 41 134 IPR025753 -
Spst3g03863 501 Gene3D - 212 388 IPR027417 -
Spst3g03863 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03863 Spst-Chr3 88680785 88683122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03863 221 385 Miscellaneous Gene Families AT3G47060 31.667 3.73e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03863 - K08900 gmx:100788420 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03863 3 88680785 88683122 Spst3g03863 3 88680785 88683122 ECH