Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03850 ATGAGGTACTATTCCCGGTTCAAACACTTTTCCCATCTCCTGAAAACCGTAAGTCCACATCAAAACCCTCCCTTTGCTTCCGCACGGATCTCGACCTTGCCAAACGCTCAACCCCGACTGCGCCCCTCCCACGCGCGCGACTACTGTGGTGCGTCGCCGTCGCACGGTTCGGAGAAGGTAGCGGCAATCGTGGACGAGGTGATTGGACTAACGTTGCTGGAAGTGATGGACCTTGTGGAGGTGCTGCGAGAGAAGCGCGGCGTCAACGAGCTTCCGATCATGATGATGATGATGGTGCCGGGGATGGGGGTGCGGGGCGTGCCCAGGGGCGCGCCGAAGAGTGTTGGTGGCGGAGAGGGAGCGGAGGTAAAGGTGGCGGAGAAGACGGCGTTTGATTTGAAGCTTGAGGGGTTCGATGCGGCGGGTAAGATCAAGGTGATTAAGGAGGTGAGGACGTTCACGAGTTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGTGCCTGCGGTGTTGAAGAAAGGCGTCACGAAAGAAGAAGCCGAGAACATCATTGCCAAGATGAAGGAGGTTGGCGCAAAGGTTTCCATGGAATAG 597 0.5662 MRYYSRFKHFSHLLKTVSPHQNPPFASARISTLPNAQPRLRPSHARDYCGASPSHGSEKVAAIVDEVIGLTLLEVMDLVEVLREKRGVNELPIMMMMMVPGMGVRGVPRGAPKSVGGGEGAEVKVAEKTAFDLKLEGFDAAGKIKVIKEVRTFTSLGLKEAKDLVEKVPAVLKKGVTKEEAENIIAKMKEVGAKVSME 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03850 198 CDD Ribosomal_L7_L12 58 197 IPR000206 GO:0003735|GO:0005840|GO:0006412
Spst3g03850 198 Hamap 50S ribosomal protein L7/L12 [rplL]. 57 198 IPR000206 GO:0003735|GO:0005840|GO:0006412
Spst3g03850 198 FunFam 50S ribosomal protein L7/L12 127 198 - -
Spst3g03850 198 Pfam Ribosomal protein L7/L12 C-terminal domain 131 197 IPR013823 GO:0003735|GO:0006412
Spst3g03850 198 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 59 102 IPR036235 GO:0003735|GO:0005840|GO:0006412
Spst3g03850 198 PANTHER 39S RIBOSOMAL PROTEIN L12 28 198 IPR000206 GO:0003735|GO:0005840|GO:0006412
Spst3g03850 198 SUPERFAMILY ClpS-like 127 197 IPR014719 -
Spst3g03850 198 Gene3D - 128 197 IPR014719 -
Spst3g03850 198 Gene3D Single helix bin 59 127 IPR036235 GO:0003735|GO:0005840|GO:0006412
Spst3g03850 198 Pfam Ribosomal protein L7/L12 dimerisation domain 59 101 IPR008932 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03850 Spst-Chr3 88547785 88548381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03850 K02935 - gmx:100775592 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03850 3 88547785 88548381 Spst3g03850 3 88547785 88548381 ECH