Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03790 ATGCAGCTGTTGGCAAAGTCGATCCTATTGGCAGACCAAGTGGCCAAGGCAGCGGAAGAGTCCAGTTCCTCGTTCAAGCAAGAGTGCTTAGAACTCAAATCAAAGACAGACAAACTCGCAGGGCTTCTTCGACAGGCCGCACGTGCGAGCTCCGATTTGTACGAGCGTCCGACGCGGCGCATCATCGCCGACACCGAACTCGTACTCGACAAGGCCCTGTCTTTGGTTCTGAAATGCCGCGCCAATGGCCTCATGAAGCGCGTGTTCAGCATCATTCCGATGGCGGCGTTTCGCAAGATGTCATCCCAGCTCGAGAATTCCATCGGCGACATGTCGTGGCTCCTCCGGGTGTCGGCTCCGGCGGAGGATCGGGGGGACGAATATCTCGGCCTCCCTCCGATCGCCACGAACGAGCCCATTTTGGGCCTCATTTGGGAGCAGGTGGCTACCCTCCATACGGGCTCACTCGACGATCGATCTGACGCAGCAGCCTCGCTGGTGTCGCTCGCACGTGACAACGACCGTTACGGGAAGTTGATCATAGAGGAAGGTGGGGTTGGACCCTTGTTGAAGCTGATTAAGGAGGGTAAAATGGAAGGTCAAGAGAACGCTGCCAGGGCTATTGGGCTTCTGGGCCGTGACCCTGAGAGCGTGGAGCTTATGATCCACGCGGGTGTGTGCTCTGTCTTCGCCAAAGTCCTCAAAGAAGGACCCATGAAAGTTCAAGCTGTGGTTGCCTGGGCCGTGTCTGAGCTGGCAGCTAAGTACCCTAAATGTCAAGATCTTTTCGCTCAGCATAATATCGTTCGCTTGCTTGTAAGCCATCTTGCATTTGAAACCGTTCAGGAGCATAGTAAATACGCAATTTTTAGCAACAAACCCACATCAATCCATGCTGTTGTGATGGCTAGTAATAATTCTAATGGCAATAGTGTGATAAAGGAGGGTGAATATGAGGAAAGGCTGATGCAAAGTCGAATGCAGCATCCCTTGGGAAATAAGTACACAAATCAGATGCATAAAGTGGTCACAAGCACCATGGCAATGCATGCTGCCAACAAGCAACAGGTACAGTCCAATCAAGACAATGAGGTGACTCAGAACTCACAAGGCGTTCAGCCAAAGGCCAATGGTAATGGTAAGCAAAACCATCAGTCCCACCAGCAAAGCTATACCTACTCTGGGATTAACATGAAGGGAAGGGAACTAGAGGACCCTGAGAATAAGGCTTACATGAAAGCAATGGCAGCAAGAGCCCTCCGACAGCTCGCCAAGGGAAACGTAGCCATTTGTCGGAGCATCACTGAATCGAGGGCTCTGTTGTGCTTTGCCATTCTCCTTGAGAAAGGGTCTGAAGATGTGAAATACAATTCTGCCTTGGCTGTGAAGGAGATCACGGCAGTGGCAGAAAAAGATGCAGAATTGAGGAGATCAGCTTTCAAACCCAACTCTCCTGCATGCAAGGCGGCTATTGATCAAGTGCTGAAGATCATAGAGAAGGAAGATACAAAACTTCTGATTCCTTGCATAAAGGCTATTGGGAATTTGGCAAGGACATTCCGGGCAACGGAGACAAGGATAATTGGTCCCTTGGTCCGGCTTCTTGAGGAAAGAGAGGCAGAAGTGTCAAGGGAAGCAGCAATCTCTCTCACGAAATTTGCCTGCTCGGAAAACTACCTCCATCTGGATCACTCAAAGGCAATTATAAGTGCAGGAGGTGCAAAGCACTTGGTCCGGCTTGTGTATTTTGGCGAACAGACAGTTCAGATTTCAGCTCTGGTTCTGCTCTCCTACATTGCATTGCATGTGCCAGACAGTGAGGAACTTGCTCGGGCCGAGGTTCTTGGATTTCTTGAATGGGCTTCCAAGCAACCTAACGTGACGCAGGATGAAACCCTCGAGGCATTGTTGCAGGAATCCAAAGGTAGGCTGGAGCTTTATCAGTCTAGAGGTTCAAGAGGATTCCAAAAATTACATCAATAG 1983 0.5038 MQLLAKSILLADQVAKAAEESSSSFKQECLELKSKTDKLAGLLRQAARASSDLYERPTRRIIADTELVLDKALSLVLKCRANGLMKRVFSIIPMAAFRKMSSQLENSIGDMSWLLRVSAPAEDRGDEYLGLPPIATNEPILGLIWEQVATLHTGSLDDRSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLIKEGKMEGQENAARAIGLLGRDPESVELMIHAGVCSVFAKVLKEGPMKVQAVVAWAVSELAAKYPKCQDLFAQHNIVRLLVSHLAFETVQEHSKYAIFSNKPTSIHAVVMASNNSNGNSVIKEGEYEERLMQSRMQHPLGNKYTNQMHKVVTSTMAMHAANKQQVQSNQDNEVTQNSQGVQPKANGNGKQNHQSHQQSYTYSGINMKGRELEDPENKAYMKAMAARALRQLAKGNVAICRSITESRALLCFAILLEKGSEDVKYNSALAVKEITAVAEKDAELRRSAFKPNSPACKAAIDQVLKIIEKEDTKLLIPCIKAIGNLARTFRATETRIIGPLVRLLEEREAEVSREAAISLTKFACSENYLHLDHSKAIISAGGAKHLVRLVYFGEQTVQISALVLLSYIALHVPDSEELARAEVLGFLEWASKQPNVTQDETLEALLQESKGRLELYQSRGSRGFQKLHQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03790 660 SMART arm_5 214 254 IPR000225 GO:0005515
Spst3g03790 660 SMART arm_5 483 518 IPR000225 GO:0005515
Spst3g03790 660 SMART arm_5 172 213 IPR000225 GO:0005515
Spst3g03790 660 SMART arm_5 427 467 IPR000225 GO:0005515
Spst3g03790 660 SMART arm_5 561 601 IPR000225 GO:0005515
Spst3g03790 660 SUPERFAMILY ARM repeat 150 628 IPR016024 -
Spst3g03790 660 Gene3D - 144 321 IPR011989 -
Spst3g03790 660 MobiDBLite consensus disorder prediction 353 388 - -
Spst3g03790 660 Pfam Armadillo/beta-catenin-like repeat 179 210 IPR000225 GO:0005515
Spst3g03790 660 PANTHER ARMADILLO REPEAT ONLY 4 2 652 - -
Spst3g03790 660 Gene3D - 398 645 IPR011989 -
Spst3g03790 660 Gene3D - 1 117 IPR036537 GO:0007166
Spst3g03790 660 FunFam Armadillo repeat only 2 146 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03790 Spst-Chr3 87917344 87919326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03790 - - gmx:100794693 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03790 3 87917344 87919326 Spst3g03790 3 87917344 87919326 ECH
Spst3g03790 3 87917344 87919326 Spst3g03790 3 87917344 87919326 PCT