Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03774 ATGAAAGAAACAAAGGAGGATAACGAGGTTAAGCTAGCCTTGAATGTCCATGTTGATCAACCTCGCGAGTGGGTGTTCTTTCGGAAGATTTGCATTCCTTTCTCTTTTGGTGAAGTTATGGCTTTAATGATTCTATTGGCATGTGAAGAAATCCATCCACCCTTGTCTGTAACTACCCGCAATGGTCACTCAGACTTGCCTGAAGCTCAGGGACTGAACAAGAGAAAAGAAGATAATAAGCAAGCTTCTGCTGATGTGTTGTTTCATTATTCAAGATTTGCGCTGGCCTGTATTGGATGCAAGATTCGACCATTCAATTTGAGGCTTCATTTAATGAAGGAGATTTCGGGTATGCCCTCTTCTCTAAATAGGGAATCACCACAGAATGCAGCATCACCTGATCCAATGGGTGAATCATCAAGCACAGGAACAGCAAGACTCGACAGAGGAGACAGTCACTCTCTTCTCCAAAGCACATCCTTCTTCCCTTCTTCTCCGCTTTACAGTGGCTTCGCTGTCTACTCTTTCAAACCACTGTCCGATTGTTCCTCTCTGTTCTTCTCTAGCAGAAGAAGCATCAGATCCATTCAGTTTCAAACTTCCATTGCCATTTATCACATCACAATGCAAGACATGTGGAATGCTCCACCGGGTTTCAGGCCCTCCAAATCAGCACCTTCTTCTCCTGCGAAGCCTCTCGGCGCTGTTCTCAGAACACGGTCTGAGTCCTTCCATGTCACTCATAAGGTCCCAGTTGGTGACACTCCTTATGTCAGAGCCAAAAACGTTCAATTGGTGGATAAGGACCCGGAGCGAGCAATTCCATTGTTTTGGGCAGCCATTAACGCGGGAGACCGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTCATGAAGCAGCAAAACCGGGCTGGAGAAGCCATTGAAGCCATTAAATCGCTTCGAAGTAGATGTTCAGATCAAGCCCAAGAATCTCTGGACAACATCCTCTTGGATCTTTACAAGCGGTGTGGGAGACTTGATGATCAAATAGCCCTCTTGAAGCATAAGTTGTACTTAATTCAACAAGGGTTAGCATTCAATGGCAAGCGCACAAAGACTGCAAGATCTCAAGGGAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCTACTAGACTGCTGGGAAACTTGGGATGGGCACTAATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGGCGGGCACTTTCTATAGCTCCCGACAACAATAAGATGTGCAATCTGGGCATTTGTTTGATGAAGCAAGGAAGAATTGGTGAGGCAAAGGAGACACTGTACCGTGTAAAACCTGCAGTTATGGATGGTCCTAGAGGCTCAGATTCTCACTTGAAAGCCTATGAAAGGGCACAGCAAATGCTGAAAGACCTTGAATCTGAGATGATGAATAAGGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTGGGTTCTTCATCGATCTGGCAACCCCAGCCTTGCAAGGACCACCACACAACCTTACCAGCAGCAACAAATTCAGCCAAATTTCGTGATGATTTTGCTGATGAGAACATCAATTCCAACATAATGACCAAAAATCACACAGCACTGCCACCATCTAAAGCGATCACTACTACTAACAAACATGTTGTTGCCATGTTGGGGAACTCACTCAATGTTGCAGCTCCTCCATTCTATGCATCAAAACCCATGTTGAGGGAACCAGTTGAGAACCAGTTCTCTGAGACCCTTAAGAGAACAAGGTCTGGAAATGTTGCAGGGTCCATGAGAGCAGTGAGTGATGTGAGAGAGAGCAACAACAAGTTGCATGTGGAATTAGGTGTGCCAGTGCCAGGGAACAAAACAAGAAGGCTCTCTTCAGAGGCTGGTGAGAAAAACAAGTTAACAGATTTATTACCTGATGACAATGACTTTGAAGAGGCCATTCTTGCTGCAATTTTGGGGCCCTCCAACGATAGTAAAGCTACCGAGACAAGCAGGATTTTGCAGAGGAATAGTGACAAGAGACTTAAGGTTTTTGAGGATATCACGTTATCTTTGAGTCCAAGAGCCTGA 2088 0.4511 MKETKEDNEVKLALNVHVDQPREWVFFRKICIPFSFGEVMALMILLACEEIHPPLSVTTRNGHSDLPEAQGLNKRKEDNKQASADVLFHYSRFALACIGCKIRPFNLRLHLMKEISGMPSSLNRESPQNAASPDPMGESSSTGTARLDRGDSHSLLQSTSFFPSSPLYSGFAVYSFKPLSDCSSLFFSSRRSIRSIQFQTSIAIYHITMQDMWNAPPGFRPSKSAPSSPAKPLGAVLRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAGEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHTTLPAATNSAKFRDDFADENINSNIMTKNHTALPPSKAITTTNKHVVAMLGNSLNVAAPPFYASKPMLREPVENQFSETLKRTRSGNVAGSMRAVSDVRESNNKLHVELGVPVPGNKTRRLSSEAGEKNKLTDLLPDDNDFEEAILAAILGPSNDSKATETSRILQRNSDKRLKVFEDITLSLSPRA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03774 695 SUPERFAMILY TPR-like 265 491 IPR011990 GO:0005515
Spst3g03774 695 ProSiteProfiles TPR repeat region circular profile. 384 417 - -
Spst3g03774 695 MobiDBLite consensus disorder prediction 120 150 - -
Spst3g03774 695 Gene3D Tetratricopeptide repeat domain 262 445 IPR011990 GO:0005515
Spst3g03774 695 Coils Coil 454 481 - -
Spst3g03774 695 MobiDBLite consensus disorder prediction 57 77 - -
Spst3g03774 695 Pfam Tetratricopeptide repeat 386 417 IPR001440 GO:0005515
Spst3g03774 695 PANTHER PROTEIN POLLENLESS 3-LIKE 2 220 689 IPR044961 -
Spst3g03774 695 ProSiteProfiles TPR repeat profile. 384 417 IPR019734 GO:0005515
Spst3g03774 695 SMART tpr_5 384 417 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03774 Spst-Chr3 87792308 87797686 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03774 - - gmx:100788369 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03774 3 87792308 87797686 Spst3g03774 3 87792308 87797686 ECH