Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03772 ATGAGCGCTTCGAGGTTCATCAAGTGCGTCACTGTTGGAGATGGAGCTGTGGGCAAAACTTGTTTGCTAATCTCCTATACCAGCAATACCTTCCCTACTGTCAGTTTTTTCTTTCTTTCTTCTTTTCATCGTCTTTATGTATTGGATTATGTGCCAACAGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTGAATCTGGGATTGTGGGACACTGCTGGACAAGAGGATTATAACAGATTACGACCGTTGAGTTATCGTGGTGCTGATGTCTTCATATTGGCCTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCCAAGAAGTGGATTCCAGAGTTAAAACATTATGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGATCTTCGAGATGATAAGCAGTTCTTCGTAGACCATCCTGGTGCTGTACCCATTACCAATGCTCAGGGGGAAGAACTTAGGAAGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCAAAATCACAAGAGAATGTGAAAGCAGTGTTTGATGCAGCCATAAGAGTTGTGCTTCAACCACCAAAGCAAAAGAAAAAGAAGGCTAAAGGTCAAAAAGCCTGTTCAATATTGTGA 639 0.4225 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTVSFFFLSSFHRLYVLDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITNAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKAKGQKACSIL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03772 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 193 IPR027417 -
Spst3g03772 212 ProSiteProfiles small GTPase Rho family profile. 1 192 - -
Spst3g03772 212 Pfam Ras family 8 193 IPR001806 GO:0003924|GO:0005525
Spst3g03772 212 SMART rho_sub_3 9 195 IPR001806 GO:0003924|GO:0005525
Spst3g03772 212 Gene3D - 5 207 IPR027417 -
Spst3g03772 212 ProSiteProfiles small GTPase Rab1 family profile. 2 212 - -
Spst3g03772 212 NCBIfam small GTP-binding protein domain 7 186 IPR005225 GO:0005525
Spst3g03772 212 PANTHER RHO FAMILY GTPASE 4 210 IPR003578 GO:0005525|GO:0007264
Spst3g03772 212 FunFam rac-like GTP-binding protein RHO1 5 207 - -
Spst3g03772 212 SMART ras_sub_4 4 195 - -
Spst3g03772 212 PRINTS Transforming protein P21 ras signature 45 61 - -
Spst3g03772 212 PRINTS Transforming protein P21 ras signature 124 137 - -
Spst3g03772 212 PRINTS Transforming protein P21 ras signature 170 192 - -
Spst3g03772 212 PRINTS Transforming protein P21 ras signature 7 28 - -
Spst3g03772 212 PRINTS Transforming protein P21 ras signature 62 84 - -
Spst3g03772 212 ProSiteProfiles small GTPase Ras family profile. 2 212 IPR001806 GO:0003924|GO:0005525
Spst3g03772 212 CDD Rop_like 6 193 - -
Spst3g03772 212 SMART rab_sub_5 7 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03772 Spst-Chr3 87778071 87780229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03772 7 195 EF-hand Containing Proteins AT5G27540 23.810 2.53e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03772 K04392 - dcr:108210382 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03772 3 87778071 87780229 Spst3g03772 3 87778071 87780229 ECH
Spst3g03772 3 87778071 87780229 Spst3g03772 3 87778071 87780229 PCT