Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03739 ATGTGTAGCATGAAAGTGTCTTCTTTTATGCTATGCTTATCGCTAGCATTCCTGCTTGGTGCCACAGCAGAACAGTGTGGTCAACAAGCTGGTGGAGCACTGTGCCCAAATGGGTTATGTTGCAGCAAGTTTGGGTGGTGTGGTAGCACTGATCCCTACTGTGGAGAAGGTTGTCAGAGCCAATGTAAATCTGGCCCCACACCTACACCTACACCTTCAACCCCAACACCAACACCTAGTGGTGGTGATATTACCAGACTCATTAGCTCTTCTCTCTTCGATCAAATGCTTAAATACCGAAATGATGGACGCTGTCCTGGAAATGGATTCTACAAATATGATGCTTTCATTGCTGCTTCTCGCTCTTTCCCTGCCTTTGGCACAACTGGTGATGACAACACTCGCAAGAAGGAAATTGCTGCTTTTTTGGCTCAAACTTCTCATGAAACCACAGGAGGGTGGGCAAGTGCACCAGATGGTCCATACGCGTGGGGATATTGCTTCATCAATGAACGAAACCAGGAAGTTTATTGTGATGGTGGGAATTGGCCATGTGCTTCTGGTAAAAAATATTATGGACGGGGACCAATCCAACTCACACACAACTACAACTATGGACAAGCTGGTCAAGCACTTAAGCTAGATTTGATAAACAATCCGGACCTAGTGGCCACAGATGCAACAGTGTCTTTCAAAACAGCCATATGGTTTTGGATGACTGCACAAGGAAGCAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACACCATCTAGTGCTGACACAGCTGCGGGTCGGGTTCCTGGGTACGGTGTGATCACCAATATAATCAATGGCGGACTTGAATGCGGGCACGGGCAGGATAGTCGGGTCGAAGATCGGATCGGGTTCTACCGAAGGTACTGTCAAATGATGGGAATAAACCCTGGTGGCAACTTGGACTGTAACAATCAAAGGCCGTTTGCCTAA 972 0.4733 MCSMKVSSFMLCLSLAFLLGATAEQCGQQAGGALCPNGLCCSKFGWCGSTDPYCGEGCQSQCKSGPTPTPTPSTPTPTPSGGDITRLISSSLFDQMLKYRNDGRCPGNGFYKYDAFIAASRSFPAFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINERNQEVYCDGGNWPCASGKKYYGRGPIQLTHNYNYGQAGQALKLDLINNPDLVATDATVSFKTAIWFWMTAQGSKPSSHDVITGRWTPSSADTAAGRVPGYGVITNIINGGLECGHGQDSRVEDRIGFYRRYCQMMGINPGGNLDCNNQRPFA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03739 323 FunFam Endochitinase (Chitinase) 169 225 - -
Spst3g03739 323 SUPERFAMILY Plant lectins/antimicrobial peptides 25 71 IPR036861 GO:0008061
Spst3g03739 323 Gene3D Endochitinase, domain 2 170 225 - -
Spst3g03739 323 ProSitePatterns Chitinases family 19 signature 2. 229 239 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst3g03739 323 Gene3D - 92 322 - -
Spst3g03739 323 Pfam Chitinase class I 87 316 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst3g03739 323 ProSiteProfiles Chitin-binding type-1 domain profile. 23 64 IPR001002 GO:0008061
Spst3g03739 323 PANTHER CHITINASE-RELATED 11 320 - -
Spst3g03739 323 CDD chitinase_GH19 88 316 - -
Spst3g03739 323 Gene3D - 23 64 IPR036861 GO:0008061
Spst3g03739 323 FunFam Basic endochitinase 23 64 - -
Spst3g03739 323 SUPERFAMILY Lysozyme-like 84 322 IPR023346 -
Spst3g03739 323 ProSitePatterns Chitin recognition or binding domain signature. 35 54 IPR018371 GO:0008061
Spst3g03739 323 SMART ChitinBD_3 25 62 IPR001002 GO:0008061
Spst3g03739 323 CDD ChtBD1_GH19_hevein 24 63 - -
Spst3g03739 323 Pfam Chitin recognition protein 25 62 IPR001002 GO:0008061
Spst3g03739 323 PRINTS Chitin-binding domain signature 48 55 IPR001002 GO:0008061
Spst3g03739 323 PRINTS Chitin-binding domain signature 33 41 IPR001002 GO:0008061
Spst3g03739 323 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Spst3g03739 323 PIRSF Endochitinase 1 323 IPR016283 GO:0004568|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03739 Spst-Chr3 87418771 87419980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03739 23 323 Glycoside Hydrolase AT3G12500 68.092 3.03e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03739 K20547 - gmx:547572 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03739 3 87418771 87419980 Spst3g03739 3 87418771 87419980 ECH
Spst3g03739 3 87418771 87419980 Spst3g03739 3 87418771 87419980 PCT