Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03735 ATGGCCAGAAGATCCCTACCGCTCCTCAAGGACCTCCTCTCGCGCTCCTCGCCCAACCGGATCACCACCCGATCCGTCACCTACATGCACCGCCCCGGCGATGGGACGCCGCGCCCGGTGACTCTGATCCCGGGCGACGGTATTGGGCCCATGGTGACGGGCGCGGTGGAGCAGGTGATGGAGGCAATGCACGCGCCGGTGTACTTTGAGAAGTTTAAGGTCCACGGGAACATGAAGGCGGTGCCGCAGGAGGTGCTGGAATCGATACGGAAGAACAAGGTGTGTCTGAAGGGTGGCCTCGTCACCCCCATGGGCGGTGGCGTCAGCTCCCTCAACGTGCAGCTCCGGAAGGAGCTTGATCTCTACGCCTCCCTCGTCAACTGCTTCAGCCTTCCTGGCTTGCACACGCGCCACGATAAAGTCGACATCATCGTCATCAGGGAGAACACCGAAGGCGAGTACTCCGGTCTCGAACACGAGGTCATTCCCGGCGTCGTCGAAAGCCTTAAGGTAATAACGAAGTTCTGTTCAGAGCGAATTGCTAATTATGCATTCGAGTATGCTTACCTGAACAACAGAAAGACGGTGACTGCTGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTTTTGGAATCTTGTAGAGAGGTTGCCACAAAATACCAGGCAATCAAGTATAACGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTGATGGTGACCCCAAATCTTTATGGAAATCTGATCGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGAGACGAGCACGCTGTATTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAGTGAACAAATATTAGAGCAAAAGATTGCGAATCCAGTGGCACTTCTTCTCTCGTCTGCTATGATGCTTAGGCATCTTCAGTTTCCTGCGTTTGCTGACCGTTTGGAAACTGCTGTGCAACATGTCATTCTGGAGGGAAAATACCGAACAATGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTGGATGCAGTCATAAATGCTTTAGATTGA 1104 0.5181 MARRSLPLLKDLLSRSSPNRITTRSVTYMHRPGDGTPRPVTLIPGDGIGPMVTGAVEQVMEAMHAPVYFEKFKVHGNMKAVPQEVLESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFSLPGLHTRHDKVDIIVIRENTEGEYSGLEHEVIPGVVESLKVITKFCSERIANYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYQAIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGDEHAVFEQGASAGNVGSEQILEQKIANPVALLLSSAMMLRHLQFPAFADRLETAVQHVILEGKYRTMDLGGTSTTQEVVDAVINALD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03735 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 28 366 - -
Spst3g03735 367 NCBIfam isocitrate dehydrogenase (NAD(+)) 36 366 IPR004434 GO:0006099
Spst3g03735 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 37 366 - -
Spst3g03735 367 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 27 366 - -
Spst3g03735 367 SMART Iso_dh_2 39 362 IPR024084 -
Spst3g03735 367 Pfam Isocitrate/isopropylmalate dehydrogenase 40 362 IPR024084 -
Spst3g03735 367 Gene3D Isopropylmalate Dehydrogenase 22 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03735 Spst-Chr3 87383177 87386435 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03735 K00030 - gmx:100777867 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03735 3 87383177 87386435 Spst3g03735 3 87383177 87386435 ECH
Spst3g03735 3 87383177 87386435 Spst3g03735 3 87383177 87386435 PCT