Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03730 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGTAGGGGTCAACGTCAACATCAATGTTCGCTGTTCTAACGGCTCCAAGTTTTCCGTTCAGACTTCCGTCGATTCCACCGTTACTTCATTCAAGGATCTCGTCGCTCGCAACTGCGACATCCCCGCCGAACAACAACGCCTCATTTACAAGGGTCGCATCTTGAAAGACGATCAAACCCTCCGAAGCTACGGTTTGGATGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGCACCTGTTAATCCAACTGGTGGTACCGATACTAGTAGCACCAATACCAATACCACAACAAATAATGCCAGAGGTGCTGGTGTGAATGAAGGTGGGGGTTTAGGAGGGCTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAAGTATCAATGGGACTAGGGTAAATGGTTTATTTGGCGAGGGATTTCCTGATCTAGAACAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAAGTAATGAATTCACCTGCCATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAGTACACTCCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGGGAAATGATGAGAAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTAAGGCGCATGTATGAAAATATTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGACATGCTAGGGACCAATCAACTAATCCCCCAACAACTAGTTCTGAAGCAACTTCTGGTTCTCCCTTACCTAATACTAACCCACTTCCAAATCCTTGGTCTTCTACTGCTGGAGGTGCTCAAAATAACACCAGAAGGTCATCCACCACTGGTGTGGATACCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAACATGTTGGGTGGAAGTGCTATGCCAGATGCTTCTTTATTGAACCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAGAGTATGCTTTCCAATCCACAGACATTAAATCAGATTCTTGGTGCTAATACTGAGCAGCGGGGCATGCCTGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAGTTCCTTCGCCTATTTTCTTCACCTGAGACATTGCAGCAGCTATTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCGACACGGGAATCTGGTCAAACCGGCAGAGGCACTGGACCTACGAACAACTTGGGATTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAACAATTGTATGCCGCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTATTGCTACTTCAGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGTTTTCAAGGGCCTTGTGGTGCGAATTCCAATAATGATGGAGAAAGCAGATTCTGTACAGAAGCTATATACTCGAATGCGCCTTTGGGAATTTCCAAATCAGTATGTGATTGAACCAACAGATGGATCTTCCGGTTCTTATTTGGCAGTTAGTCGAAGAGATGGCTCCATAAAGCTCATTGATGAGATTCCTGAATGCAGCACCGTTCGAGTTCCTAAGCTTTTTACAATTTATGGTGTGGCTGGAATGTTAAGGCTTTTGGCTGGATCTTATTTGCTGGTTATAACGGGGCGTGAATGCGTTGGATCTTACTTGGGACATCCAATTTTCAAAGTTACATCTCTCAAGGTTTTTCCATGTTCCCCCAGTTTTAACACCCCTCCTGAACAGAAGAAGTCAGAGATCGATTTTACTGCGATATTGAATGTTGCTGAAAAGACTACTGGTCTGTTCTTCTCATACGAGGCTAATTTAACTATCAGTACCCAAAAACTAAATGACCTTGGTGATGATGAGTCTAAGTTGCTTCCCCTCTGGAGACAGGCAGAGCCTCGATTTCTATGGAATAATTATCTGTTAGAAGTGCTCATAGAAAACAAGGTGCACCATAAGGAAACATTATCTGTCCCTGAGGAATCTCCATCCTCTTGCTCCATTGCCAAGTTGAGTGAACTACCAACCTTAGAGATTGATACCAAGAAGGATAACAATGAAAGACAGGAGGAAGAAACTTGTTACAGTGCAAGTCACGAGACTACACAGGCTTCCAAGGATTTTGGAGGAACCCGGATGTGGAGAAGAGGAGCTGATCCTGATGGATATGTGGCTAATTTTGTGGAAACAGAGCAAATTATGCAGATCAATGGGTATACAGGATCAATTGTTCAGGTTCGTGGTTCAATTCCGGTGCCTTGGCAGCAAATTGTTGACTTAACATATAAACCTAAGTATGAAATATTGAAACGTGACGAAGCTCCCCGAGTCTTGGAGAGGCATTTCTTAGATTTAAGAAAAAAGTATGGGTCTGTGTTAGCTATTGATCTAGTTAACGAGCATGGAGGAGAAGGGCGGCTATGTGAACAATTTGGAAAAACAATGCAACATGTATCTGGTAATGATGTCAGATATCTGCATTTCGATTTCCATCACATTTGCGGGCACATTCATTTCGATCGTCTCTCAATCCTCTATGATCAAATATCTGATTTTGTTGAGAGAAATGGATATCTTCTATTGAATGAAAAGGGAGAGAAAATGAAGGAGCAACTTGGGGTTGTTAGAACCAATTGTATTGATTGTCTAGACCGCACAAATGTTACTCAGAGCATGATAGGCCGAAATATGCTAGAATTCCAGCTTAGAAGAATTGGGATCTTTGGTGCTGAGGAAACCATTAGTTCACATCCAAATCTAGATGAAAAATATAAGATCTTGTGGGCTGATCATGGAGATGATATAAGTACTCAATATACAGGAACTCCTGCTCTCAAAGGAGACTTTGTCCGATTTGGGCATCGCACGTTTCAGGGCATAATAAATGATGGTTGGAATGCTCTTATGCGCTATTATTTGAATAACTTTTGTGATGGAACAAAGCAGGATGCTATTGATCTCTTGCAAGGACATTTCATAGTTTCTGGCAACCGAGATTCGACTCCTCAGAATCAAGGCATTGAAGCTATTGCTTCATTTCCTCTGGCTTTGGGTTTGGTTTTGACTGGGTTCTTTTTCACATTCATGTCGTTGACGCAAGAGATACGGGCAAAATGGTGGATCCGTGGTGATATTGGTCCCACTTTCCCTTTTGTTCAACAGATGAAAATTGAGGAATCCGTTCATTCTTGCTTCCTGTTTCCATCAACTCCTTTCTTTCTGCCCCCTGTTAGATATGATTTTAGGCACTTGTTCTTCTCACTATTGTGGGCAAGCATTAGTGTTGGGATAGCAGCATTTGTGAAGGCCAATGGTCGCGTTTTCTGCAACAGACCTCGCCTACACAAGCCGCGGGTTCTAGTATCCATCCCTTTAGTTGGGTTTGAAACCACCACCGTTGTCCCGTCCCCGCCGTTACCGGTAGATAAAGTGCCGCCGCCGAGAACGACGCACGCCCCTCCTATTCAACTCGTCTCTGCTATACCACCAGAGCCTGTAACCACCATTGTTCCCTCAGTTCGAAACCACCGCCTTCAAGTTCTCCAAGCCCTCCCAAGTTCTTTTGCGTTACGCGTTCAAGCATCCCTAGGTCCACCTTCCGCGTTCTCCAATTTCAAGGATTTGTTTGAGTGTTCAACTAGAGCATAA 3915 0.4373 MGGDSAVEESVGVNVNINVRCSNGSKFSVQTSVDSTVTSFKDLVARNCDIPAEQQRLIYKGRILKDDQTLRSYGLDADHTVHLVRGFAPVNPTGGTDTSSTNTNTTTNNARGAGVNEGGGLGGLGFGASLFPGLSINGTRVNGLFGEGFPDLEQMQQPFLSNPNLVREVMNSPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPPTTSSEATSGSPLPNTNPLPNPWSSTAGGAQNNTRRSSTTGVDTRQQGPTGLGGLGLPDLENMLGGSAMPDASLLNQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRESGQTGRGTGPTNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYAAQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSVFKGLVVRIPIMMEKADSVQKLYTRMRLWEFPNQYVIEPTDGSSGSYLAVSRRDGSIKLIDEIPECSTVRVPKLFTIYGVAGMLRLLAGSYLLVITGRECVGSYLGHPIFKVTSLKVFPCSPSFNTPPEQKKSEIDFTAILNVAEKTTGLFFSYEANLTISTQKLNDLGDDESKLLPLWRQAEPRFLWNNYLLEVLIENKVHHKETLSVPEESPSSCSIAKLSELPTLEIDTKKDNNERQEEETCYSASHETTQASKDFGGTRMWRRGADPDGYVANFVETEQIMQINGYTGSIVQVRGSIPVPWQQIVDLTYKPKYEILKRDEAPRVLERHFLDLRKKYGSVLAIDLVNEHGGEGRLCEQFGKTMQHVSGNDVRYLHFDFHHICGHIHFDRLSILYDQISDFVERNGYLLLNEKGEKMKEQLGVVRTNCIDCLDRTNVTQSMIGRNMLEFQLRRIGIFGAEETISSHPNLDEKYKILWADHGDDISTQYTGTPALKGDFVRFGHRTFQGIINDGWNALMRYYLNNFCDGTKQDAIDLLQGHFIVSGNRDSTPQNQGIEAIASFPLALGLVLTGFFFTFMSLTQEIRAKWWIRGDIGPTFPFVQQMKIEESVHSCFLFPSTPFFLPPVRYDFRHLFFSLLWASISVGIAAFVKANGRVFCNRPRLHKPRVLVSIPLVGFETTTVVPSPPLPVDKVPPPRTTHAPPIQLVSAIPPEPVTTIVPSVRNHRLQVLQALPSSFALRVQASLGPPSAFSNFKDLFECSTRA 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03730 1304 CDD UBA_PLICs 498 536 - -
Spst3g03730 1304 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Spst3g03730 1304 SUPERFAMILY Ubiquitin-like 15 102 IPR029071 -
Spst3g03730 1304 Gene3D - 13 95 - -
Spst3g03730 1304 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Spst3g03730 1304 ProSiteProfiles Sac phosphatase domain profile. 679 1030 IPR002013 GO:0016791
Spst3g03730 1304 CDD Ubl_Dsk2p_like 15 87 - -
Spst3g03730 1304 Pfam SacI homology domain 616 923 IPR002013 GO:0016791
Spst3g03730 1304 MobiDBLite consensus disorder prediction 267 359 - -
Spst3g03730 1304 PANTHER PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 559 1205 - -
Spst3g03730 1304 SMART CBM 399 434 IPR006636 -
Spst3g03730 1304 SMART CBM 192 231 IPR006636 -
Spst3g03730 1304 SMART CBM 343 396 IPR006636 -
Spst3g03730 1304 SMART CBM 138 179 IPR006636 -
Spst3g03730 1304 Gene3D - 187 244 - -
Spst3g03730 1304 MobiDBLite consensus disorder prediction 89 111 - -
Spst3g03730 1304 Pfam UBA/TS-N domain 498 534 IPR015940 -
Spst3g03730 1304 Gene3D - 480 542 - -
Spst3g03730 1304 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Spst3g03730 1304 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Spst3g03730 1304 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Spst3g03730 1304 SMART uba_6 498 536 IPR015940 -
Spst3g03730 1304 MobiDBLite consensus disorder prediction 267 342 - -
Spst3g03730 1304 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Spst3g03730 1304 MobiDBLite consensus disorder prediction 446 467 - -
Spst3g03730 1304 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Spst3g03730 1304 SMART ubq_7 15 86 IPR000626 GO:0005515
Spst3g03730 1304 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03730 Spst-Chr3 87310228 87344797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03730 551 1207 Acyl Lipid Metabolism Gene Families AT3G51460 61.515 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03730 K04523 K21797 gmx:100796999 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03730 3 87310228 87344797 Spst3g03730 3 87310228 87344797 ECH
Spst3g03730 3 87310228 87344797 Spst3g03730 3 87310228 87344797 PCT