Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03719 ATGGAATCCAGTCCATACTTGGTAGTGAGCAGTGGGATAGGTAGCATACCTTATGGATATGCTAGTGGCTTCAAACCCCCTCTATTACTCGTGGTTTATCTTGGGGTGAGGATGGAAGACATAGCAAGTGAAGAACATCAGTGGTCACTAGCAGCTCCTTTCATATTTTTTGTTGTTCTAGCCTTTCACTTAGCTTCTCAGTGGATTGATCAATTCAAGAAGAGTGGATCTGACAACGAAAAAGAAGCTAAGTTACATGTAGAAATAAAGGAACTTTTGAAGGAGGCAAACTCATTGTCACAGCCATCAACCTTTGCACAAGGTGCAAAACTCAAGAGACTAGCCGCAGCAAAGGAGAAGGAACTTGCAAAATGTCAAAATTTACACAACAAGGATACTGCTTTGTATTCAAAATCCCTGCTTATCTCAAAGGTTTTAACATATCTAATTTTGCTTGCCTGGTTTTGGAGTGTTCCTGTGGCTTGCATATCTCAGCAACTTGTGCAACCATTTGGGAGATTCTTATCTTGGAGAACTGGAGGGATTCAGAATGACAATATTATAGTTGGTATAATACCTTGGCTGATAGTGTCTACCAGGTTCGATTTGGGATTCCCCTTTAGTGTGATCGCAGCGCTGGATCCGTATCGTCTTCCTCCGTCTACCGAAGCGCCTTTTGCTCGTCCTTTCAGCGATCTTGGAAACATGTATGGTCCCCGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGGACAGGCAGCTTACCTTATGGATATGCTGGTGGCTTTCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGTACCGACATTGACATCTTGAAGTTTTTTGCTGGACTGACCATTGTAGATGTATTGCTGGTCAACAAGAGTGGACGGTTCTCAGGTGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGAGATCGCCAGAACATGGGTCGCCGGTATGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTATAATGCTGTTGCTGCTGAGATAAATTATGAAGGAATATATGATAACGATTACCATGGCAGTAGTCCTCCACCCTCCCGGTCAAAGAGGTTCAGTGATAAAGATCAAATGGAGTATACTGAGATATTGAAGATGCGTGGCCTTCCCTTCCAAGTGACAAAATCTCAAATTGTTGAATTCTTTAAAGATTTCAACCTGATAGAAGACAGGGTACACATTGCGTGTCGACCTGATGGAAAAGCTACTGGAGAGGCATATGTGGAGTTTGTTTCTGCTGAGGAGGCTAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTATGTGGAGCTGTTTCCTTCTACTCCAGATGAGGCTAGACGAGCAGAGTCAAGATCAAGGCAGTGA 1500 0.4473 MESSPYLVVSSGIGSIPYGYASGFKPPLLLVVYLGVRMEDIASEEHQWSLAAPFIFFVVLAFHLASQWIDQFKKSGSDNEKEAKLHVEIKELLKEANSLSQPSTFAQGAKLKRLAAAKEKELAKCQNLHNKDTALYSKSLLISKVLTYLILLAWFWSVPVACISQQLVQPFGRFLSWRTGGIQNDNIIVGIIPWLIVSTRFDLGFPFSVIAALDPYRLPPSTEAPFARPFSDLGNMYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEINYEGIYDNDYHGSSPPPSRSKRFSDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFNLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03719 499 SMART rrm1_1 293 362 IPR000504 GO:0003723
Spst3g03719 499 SMART rrm1_1 411 483 IPR000504 GO:0003723
Spst3g03719 499 Gene3D - 291 375 IPR012677 -
Spst3g03719 499 Coils Coil 111 131 - -
Spst3g03719 499 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 287 491 - -
Spst3g03719 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 357 IPR000504 GO:0003723
Spst3g03719 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 480 IPR000504 GO:0003723
Spst3g03719 499 SUPERFAMILY RNA-binding domain, RBD 284 371 IPR035979 GO:0003676
Spst3g03719 499 CDD RRM_hnRNPH_ESRPs_RBM12_like 411 483 - -
Spst3g03719 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 487 IPR000504 GO:0003723
Spst3g03719 499 SUPERFAMILY RNA-binding domain, RBD 409 496 IPR035979 GO:0003676
Spst3g03719 499 CDD RRM_hnRNPH_ESRPs_RBM12_like 293 362 - -
Spst3g03719 499 Gene3D - 394 499 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03719 Spst-Chr3 87211668 87222867 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03719 K12898 - gmx:100816391 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03719 3 87211668 87222867 Spst3g03719 3 87211668 87222867 ECH