Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03653 ATGGCGACACTGCTGAGAAAACTGTGCGAATCCGCGACGCTCAAGCGAACGGGCTCCAATTCGAATCCGAACCCATCCTCGGAGCGCGCGCCATCTCCTCTCGGCGCCTTCGACCCTCTCCCCGCCGATATACTGATGCAAATCGTGAGACTCTTGGGCCCCAGACACGCCGCCAGACTCAGCCTTCTCAGCAAGTCCTGGAGATCTCTTGTCTCCGACAACGACCTCTGGGCCCACTTCCTCCACACTCACCACCCCCACTCCGCATTCTTCGCCGAAACCGCTCTCAGCTCCGGCTACCCTCTTCCGACATTGGCTGCTCAGAGCTCGCCACGTGTCTCGCTGCAGCATGTTTACGCCCTCCGTGAACGGCTCCCTCCGTCCGTTGTCATCGACGGTTCGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGACGCTTCTCCTTCCGGGCAATTCGCGACCTTTTTGGTGACGTATTTCATGTCTTGATTCTCTGTTTTGAGCGAATGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAGCAGCTTAAAGAGGCAATCTATGCTGCCCTGTTTGACATGAACGTTCCTGCTGTTTGTGCTCTCAATCAGAAGTTGAGTGGTGCTGTGGTGTCAAATGGCAGTGGTGACAAGGGATGTGCTAGTACATTTGCAGTAACTCTTCTGCTCTATGGTGCACATGCAAGTTCTTTCTGTACCAATGAGTGTGCATTGCACCCACCCTTCAATCTAACCAATCATTCTGGGGTCGTCCAGGATCAAATACATGGGACTTTAGCTTTGTATGCTGCAGAACAAACATCTGGGATAGCTGTTAATATAGGATTTCAAGTGACATCTGTAGTTCCAAGTAAAGTGATGCGAAAGGTGGGTGTTGAAGTTGTGGGGCTGGGAGCACTAAAACTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTTTATACACTGTTCGCACACTGAAAGAGAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTATTGAAAGATACACAAGCGTCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATCTTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCAGCAGGCCATCGCACTTTGTATGGAGCATTGCTATTCTGCAGAATTAGCAGGTAACAACGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAACTTCATTCGTCACTTCCTCCTTATATATCCGATGGAATTAGAGTCATACCTCCTCCATTCGGTGCGGATACTGCATGGTTTGGTGGAAAGATTCTTGGCAGTTTGAGCACCTTTCCTGGCCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAAATCAACCGCATTTGGTGA 1542 0.4831 MATLLRKLCESATLKRTGSNSNPNPSSERAPSPLGAFDPLPADILMQIVRLLGPRHAARLSLLSKSWRSLVSDNDLWAHFLHTHHPHSAFFAETALSSGYPLPTLAAQSSPRVSLQHVYALRERLPPSVVIDGSGFWLLQIRLEQRRFSFRAIRDLFGDVFHVLILCFERMMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQKLSGAVVSNGSGDKGCASTFAVTLLLYGAHASSFCTNECALHPPFNLTNHSGVVQDQIHGTLALYAAEQTSGIAVNIGFQVTSVVPSKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLQQAIALCMEHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSSLPPYISDGIRVIPPPFGADTAWFGGKILGSLSTFPGPWCTTKKQFRQKSKINRIW 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03653 513 MobiDBLite consensus disorder prediction 13 29 - -
Spst3g03653 513 Gene3D - 284 478 - -
Spst3g03653 513 SMART actin_3 126 503 IPR004000 -
Spst3g03653 513 SMART fbox_2 40 80 IPR001810 GO:0005515
Spst3g03653 513 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
Spst3g03653 513 SUPERFAMILY Actin-like ATPase domain 294 500 IPR043129 -
Spst3g03653 513 Pfam Actin 284 499 IPR004000 -
Spst3g03653 513 Pfam F-box-like 40 79 IPR001810 GO:0005515
Spst3g03653 513 MobiDBLite consensus disorder prediction 13 33 - -
Spst3g03653 513 Gene3D Actin; Chain A, domain 4 324 406 - -
Spst3g03653 513 PANTHER ACTIN 163 505 IPR004000 -
Spst3g03653 513 SUPERFAMILY F-box domain 27 100 IPR036047 GO:0005515
Spst3g03653 513 Gene3D - 283 505 - -
Spst3g03653 513 Gene3D - 33 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03653 Spst-Chr3 86563524 86571168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03653 282 509 Miscellaneous Gene Families AT2G42100 33.878 7.30e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03653 K16616 - gmx:100804254 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03653 3 86563524 86571168 Spst3g03653 3 86563524 86571168 ECH