Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03628 ATGCACTGCGCAATGGACTTCACCAGGCTCTCCACCCCCAAACCTGCCCCCATCTTCACGCGTCCCCTCACCTGGGTCACCTCCACCGCCCTCCGCCACCAACGCCGCCACCTTCCTCCCCCAACCCCCCCACCAACCCCTCCGCCGCCACCTCACCCCACTCCTCTGCAAACCTCTTACGACGCGCCTCTCACCCTTCTACCTTCCATTCTAACCAGCAGGGTTCTAGATTCTTCCAAATGTAAATCCATTTTGCCCCATTTGTCCCCCCACGAATTCGATCGCTTATTCTTGCCCCTCCACCACACCGTTAACCCCAAAACGACACACGACTTCTTCCGTTTCGCCACTTCCCGTTTTAAGTTCCGGTTCACCGTTCGCTCCTATTGCCTCCTCCTCCGCTCGCTTCTTGCTTCCAGTTTTTTGCCGCGCGCCAGGTTTTTGCTAACTCGTTTGATCGACGGCCACGTTCCGACGTCGTTTGACGACCGCGAGACCAGGCTCCGCGAAATAGCTTCCTCAATGTTGGAGCTGAATCAGGTTTCGGATAAACGACTCGGCGAATTGGATTTGTTGCTCCACATTCTCTGCTCTCAGTTCAAGAGTTTTGGCTTCCGTTACGCTTTTGATATTTTCATCATGTTTTCGAAGAAGGGCGTTTTCCCGTGTTTGAAAACTTGCAATTTTTTGATGAGCTCGTTGGTGAAGGCCAATGAGCTTCACAAGAGTTATGAAGTGTTTGATGTTATTTGTCAAGGCGTTGCGCCTGATGTTTTTACGTTCACCACCGCCATTAACGCGCTATGCAAGGGAGGGAGAGTTGGAGAAGCTGTGGATTTGTTCCGCATGATGGAGGGGCACGGTGTTTCGCCGAATGTGGTTACTTACAACAATGTGATTGATGGGTTGTGTAAGAGTGGGAGGTTAGATGAGGCGTTTCAGTTTAAGGATAGGATGGTTAGGAGCAATGTGAATCCGAGTGTGGTGACCTATGGTGTGCTCATCAATGGTTTGATGAAGTTGGAGAAATTTGAGGAGGCGAGTGAAGTGTTGGTTGAAATGTACAGCAAGGGTTTTGCTCCCAATGAGGTTGTGTTTAACGCACTGATTGATGGGTACTGCAGGAATGGGAATATGATTGAGGCATTGAGGATTAGGGATGAGATGGTATTGAAAGGCGTGAAGCCTAATTCTGTTACTTTTAATACCCTTTTACAGGGTTTTTGCAGGAGCAATCAAATGGAGCAGGCTGAGCAGGTATTGGGGTACATATTGTCTAGTGGTTTGTCTGTTAACATGGATGCGTGTTCATATGTGATCCATCAGTTGTTGAAAAAATCTAGTTTGGATTCAGCTTTAAAAATTGTGAGAGAGTTGTTGTTGAGGAACATCAAGGCTAATGATAGCTTGCTAACCCAGTTGGTCTGCGGACTTTGTAAATGTGAAAAACATTTGGAAGCGATTGAGCTTTGGTTTATGTTGGCAGGTAAAGGGCTTGCTGCCAATACAGCGACCTCAAATGCGCTTCTCCATGGACTTTGTGAACGAGGGAACATGGAGGATGTTTTCAAAATACTCGAACAAATGCTTGAGAAAGGTTTGTTACTGGATAGGATCTCATACAACACACTTATTTTTGGCTGTTGTAAATGGGGTAAAATTGATGAAGCTTTCAAACTCAAGGAAGAGATGGTTCAGCAAGAATTCCAACCAGATACGTATACCTACAATTTCCTAATGAAATGGTTGGCTGATATGGGTAAAATAGATGATGTTCATAGGCTTTTGCACGAAGCTGAAGAATATGGCATAGTTCCCAATGTCTATACACATGCACTTTTATTAGAAGGATATTGTAAGGCTGATCGGATTGAAGATGCTATAAAATTGTTTAAGAAACTAGTTTATGAGAAAGTAGAGCTAAGTTCTGTTGTTTATAACATACTTATTGCAGCCTACTGTAGAGTTGGGAATGTGACAGAAGCCTTCAGACTGCGTGATGCTATGAAGAGTGGGGGCATGCCACCTACTTGTGCTACATATTCTTCTCTAATACATGGAATGTGCTGTTTTGGCCGTGTGGATGACGCAAAGGAAATTTTTGAAATAATGAGAAATGAAGGCTTGTTTCCGAATATATTTTGTTATACTGCTCTAATTGGTGGTTACTGTAAGCTGGGTCAGATGGACAAAGTGGAGAGTATCTTACAGGAAATGTCTTCAAAGAGTATACAACCTAATAAAATTACATACACTATTGTGATTGATGGGTATTGTAAATTAGGAAATGTGAAAGAAGCTACAAAAATTTTAAATGTGATGATAAGAAATGGAATAGCTCCAGATACCATTACTTACAATACACTAGAAAAAGGATATTGCAAGGAAAGGGAGCTAGAAGTTACTTTACAAAGTGATCATATGTCTAACATAGGACTACCCTTAGAAGAAGAAATTACTTATAACACATTGGTTCACAGGTTGCATCCACATACAGCAGTTATCAATAAAGAACGATGA 2520 0.4353 MHCAMDFTRLSTPKPAPIFTRPLTWVTSTALRHQRRHLPPPTPPPTPPPPPHPTPLQTSYDAPLTLLPSILTSRVLDSSKCKSILPHLSPHEFDRLFLPLHHTVNPKTTHDFFRFATSRFKFRFTVRSYCLLLRSLLASSFLPRARFLLTRLIDGHVPTSFDDRETRLREIASSMLELNQVSDKRLGELDLLLHILCSQFKSFGFRYAFDIFIMFSKKGVFPCLKTCNFLMSSLVKANELHKSYEVFDVICQGVAPDVFTFTTAINALCKGGRVGEAVDLFRMMEGHGVSPNVVTYNNVIDGLCKSGRLDEAFQFKDRMVRSNVNPSVVTYGVLINGLMKLEKFEEASEVLVEMYSKGFAPNEVVFNALIDGYCRNGNMIEALRIRDEMVLKGVKPNSVTFNTLLQGFCRSNQMEQAEQVLGYILSSGLSVNMDACSYVIHQLLKKSSLDSALKIVRELLLRNIKANDSLLTQLVCGLCKCEKHLEAIELWFMLAGKGLAANTATSNALLHGLCERGNMEDVFKILEQMLEKGLLLDRISYNTLIFGCCKWGKIDEAFKLKEEMVQQEFQPDTYTYNFLMKWLADMGKIDDVHRLLHEAEEYGIVPNVYTHALLLEGYCKADRIEDAIKLFKKLVYEKVELSSVVYNILIAAYCRVGNVTEAFRLRDAMKSGGMPPTCATYSSLIHGMCCFGRVDDAKEIFEIMRNEGLFPNIFCYTALIGGYCKLGQMDKVESILQEMSSKSIQPNKITYTIVIDGYCKLGNVKEATKILNVMIRNGIAPDTITYNTLEKGYCKERELEVTLQSDHMSNIGLPLEEEITYNTLVHRLHPHTAVINKER 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 712 746 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Spst3g03628 839 MobiDBLite consensus disorder prediction 31 58 - -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 781 IPR002885 -
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 197 355 IPR011990 GO:0005515
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 435 599 IPR011990 GO:0005515
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Spst3g03628 839 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 101 495 - -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 711 IPR002885 -
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Spst3g03628 839 Pfam PPR repeat 603 633 IPR002885 -
Spst3g03628 839 Pfam PPR repeat 253 285 IPR002885 -
Spst3g03628 839 SUPERFAMILY HCP-like 501 703 - -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 680 713 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 507 537 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 574 608 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 749 783 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 259 293 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 644 678 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 609 634 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 539 573 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 329 363 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 714 747 IPR002885 -
Spst3g03628 839 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Spst3g03628 839 Pfam PPR repeat family 291 340 IPR002885 -
Spst3g03628 839 Pfam PPR repeat family 711 760 IPR002885 -
Spst3g03628 839 Pfam PPR repeat family 642 689 IPR002885 -
Spst3g03628 839 Pfam PPR repeat family 538 584 IPR002885 -
Spst3g03628 839 Pfam PPR repeat family 361 410 IPR002885 -
Spst3g03628 839 MobiDBLite consensus disorder prediction 37 57 - -
Spst3g03628 839 Pfam PPR repeat 472 498 IPR002885 -
Spst3g03628 839 Pfam PPR repeat 505 534 IPR002885 -
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 670 740 IPR011990 GO:0005515
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 741 809 IPR011990 GO:0005515
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 356 426 IPR011990 GO:0005515
Spst3g03628 839 Gene3D Tetratricopeptide repeat domain 600 669 IPR011990 GO:0005515
Spst3g03628 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03628 224 819 Glycosyltransferase AT1G05670 26.159 2.05e-70 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03628 - - gmx:100819570 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03628 3 86333020 86335539 Spst3g03628 3 86333020 86335539 ECH