Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03622 ATGAGAGGTAGCAGTGGGGAATTTTCCGGGCGAAAGCTTGACGGAGCAATGCCGCGTAAAGAAGAAAATGCTTTTGTGAGCATCACAGAGACAAGGATGTCGCTGATAATGAGAAAAAGACTAGGTTGCTGCTCAAAGGAAACCAAAATCAGCATTGATTTTGATGAACCAGAGAGTAGTAAGTTCTTTCCTTACTCTTCCTTGTACCTGCTTCATTCTTCTGTAGACTCAAACTCGGTTGATATATTATATCGTACTTTCAACCCCATAATCAAATCAAGTGAGACGTGGACAAATTTGACCGATGGTTATACCCTTCTCCCTGGTGTGAACCTGAGAGGTGCAATTGGTGCCTTATCTGGCACACCTAGCAATCGCAAAGATGCTTTTGGATCGTTCTCTTCAAAATGTTTGACAACGAAAAGAGATGAACAAGGATTCGAAGAGTGGGAACTCTCAGAAAGTCCTCCAAATTTTTTTGTTAAAGAGAAGTCTGCTTTTGACGTCCAAAGTTCAGACGTAGAAGCCATGAAAGAGAAGTTTGCAAAGCTGTTGCTAGGTGGTGATATTACAGGAGGATCGAAAGGCCTCAATACAGCTTTAGCACTGTCTACTGCCATCACAAGCCTTGCAGTGACGGTTTTTGGTGAGTTGTGGAAATTGGAACCACTATCTGAAGAGAGGAAGAGCAAATGGCAAAGAGAAATGGGATGGTTGTTGTTTCCAACTAACTATATGGTTGAGTTAGTACCTGCTAAGCAAAATGGCGCCAATGGTGGGATCTTTGAGATAATGACCCCAAAAGCCCGTACCGACATCCAAATGAATCTTCCAGCACTTCAGAAGCTGGACTCTATGCTTATTGAGACACTAGACTCGATGGTAAATACTGAGTTCTGGTATGCAGAGGAAGGAAGCCGGTCAGAAGGGAGAAACACAACGGGAAGACAAAGCAAAAGATGGTGGCTTCCATCACCCCGAGTACCAAGAACTGGACTTTCTGAAGTTGAAAGAAAAAGGCTGCTTGATAAGGGAAGGATGGTGCATCAAATATTCAAGGCTGCCAAAGCTATCAATGATAATATGTTGCTTGAGATACCCGTGCCAACAATAATTAAGGATGCACTTCTGAAGTCTGGAAAGGCAAGTCTTGGAGAGGAACTGCACAAGGTTTTGATGGCTGAATCGGGTTCTGGAGAAGAAATGCTTAAAGCTCTCAATTTGAAATCTGAACATGCTGTCCTAGAGACCATTAATAAATTGGAAGCTGCTACATTTTCATGGAAAGAACGAATCATACAAGAAAACAGTGGGAAATCCCCGGTTCGAACCTCATGGTCCTTCTTGAAGGAGCCGGTGTCAGGTATAGATAAGATGGAACTATTGTTGGAACGTGCAGAAGCACTTCTAAATCTGCTTAAAACCAGACATCCAAACCATCCTCAAACATTTCTGGATGCTGCAAAAGTTCAATATGGCAAGGATATTGGCCATTCCATTTTGGAAGCATACTCTAGAGTTCTTGGAAGTTTAGCCTTTAGCATACTGTCTAGAATAGGAGATATATTGCAGGAGGATGCTTTAAGCAATCCCAATTCACCTATCTCGACAAGTCACTCTCCTGGGACAAATCTCTCTGAAGCTTGGGTGGTTGGTTCACGTATCAGACACTCTTTAATAGACAGGATGAATGAGGCAGATGGACAACAATGTGGTTCTAGTTGTGCCAGTACTTCTGACACAGAACTCCCATCTACTGAGGCCAGTGCCAGCATTGTAACTGCCACGCCAAGCCGTGGTCGATTGTGGTGCATTGGTAAAAACATGTCAAAAATGTCTCCTCAATATTCCTCACAGTGGCTTTGA 1866 0.4309 MRGSSGEFSGRKLDGAMPRKEENAFVSITETRMSLIMRKRLGCCSKETKISIDFDEPESSKFFPYSSLYLLHSSVDSNSVDILYRTFNPIIKSSETWTNLTDGYTLLPGVNLRGAIGALSGTPSNRKDAFGSFSSKCLTTKRDEQGFEEWELSESPPNFFVKEKSAFDVQSSDVEAMKEKFAKLLLGGDITGGSKGLNTALALSTAITSLAVTVFGELWKLEPLSEERKSKWQREMGWLLFPTNYMVELVPAKQNGANGGIFEIMTPKARTDIQMNLPALQKLDSMLIETLDSMVNTEFWYAEEGSRSEGRNTTGRQSKRWWLPSPRVPRTGLSEVERKRLLDKGRMVHQIFKAAKAINDNMLLEIPVPTIIKDALLKSGKASLGEELHKVLMAESGSGEEMLKALNLKSEHAVLETINKLEAATFSWKERIIQENSGKSPVRTSWSFLKEPVSGIDKMELLLERAEALLNLLKTRHPNHPQTFLDAAKVQYGKDIGHSILEAYSRVLGSLAFSILSRIGDILQEDALSNPNSPISTSHSPGTNLSEAWVVGSRIRHSLIDRMNEADGQQCGSSCASTSDTELPSTEASASIVTATPSRGRLWCIGKNMSKMSPQYSSQWL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03622 621 ProSiteProfiles PRONE domain profile. 164 536 IPR005512 GO:0005085
Spst3g03622 621 Gene3D PRONE domain, subdomain 1 404 535 - -
Spst3g03622 621 Gene3D PRONE domain, subdomain 1 166 403 - -
Spst3g03622 621 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 172 530 IPR005512 GO:0005085
Spst3g03622 621 FunFam Rop guanine nucleotide exchange factor 14 399 535 - -
Spst3g03622 621 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 136 573 IPR038937 GO:0005085
Spst3g03622 621 Coils Coil 456 476 - -
Spst3g03622 621 FunFam Rop guanine nucleotide exchange factor 14 166 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03622 Spst-Chr3 86291257 86300468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03622 - - var:108332640 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03622 3 86291257 86300468 Spst3g03622 3 86291257 86300468 ECH
Spst2g01094 2 9648538 9657696 Spst3g03622 3 86291257 86300468 PCT