Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03619 ATGTATCACAGATTCACTCCACACACAATTGAATCAGCTCACAAGAATCTCCCTCTCCTCCATTACTCGGCTGAACTTTCTTCCTTGCGGCGAGTCTCTGAACTGAACCACCCCTTCGATGCCCCGCCCCGGACCCATCGATTCATGAATCGTCAAATGGAGGCAGTGGCCGAAAACCCCGCTAGGTCGAGGGGGTTAAAGTACCCCCCATCCATAAACCCTAACAAACCGCAACCACCCCCGATTCCCAAACCCAACCAATTCCCCTCCCACATCGACGCGCCCAACGTCTCCTCCACCGCGCGTGCACTCTGCGACATCCTCACCCGCACCTCCCCTCATGACATCGAAACCGCCCTCTCCTCCTCGGGAATCGTTCCGGAGGAGGACCTCGTCAACGAGGTCCTCAAACTCTCCTACAATTACCCTTCCTCCGCCGTCAAGTTCTTCCGGTGGGCCGGGCGTGGCAAAAAGCACCCGGCCCACACCTGGAACTTGATGGTCGACCTGCTGGGTAAAAACCAGCTTTTCGAGCCCATGTGGGACGCCGTCAGGTCCATGAAACAGGAAGATAAGCTTTCTCTCTCCACCTTCGCCTCCGTCTTCCAGAGCTACTGCGCCGCCGGTAGATTTAATGAGGCCTTCATGAGCTTCGACGTCATGGATAGGTACGGCGTCAAGCAGGACGTGGTCGCCCTTAACTCGCTCCTCAGCGCCATTTGCACCGAGGACAACCAAACATCCGCGGGCCTCGAGTTCCTCGAGAGGATAAAGGGGAAGGTGTCGCCTGACGGCGACACCTTCGCCATTCTTCTCGAAGGGTGGCAGAAGGAAGGCAATGCTGCCAAAGCTAAGATCACGTTTGGGGATATGGTGGCTCAAGTTGGCTGGGACAAGGACAATGTTGCTGCCTACGACGCGTTTTTTATGACCCTCTTTCACGCTGACCTCATGGATGATGTTGTCAGGTTCCTTCAGGTTATGAAGGACCATGACTGCTTCCCAGGTTTGAAATTCTTTACCAACGCGCTTGACGCTCTTGTCAAGCGAAACGACGCCCATCACGCTGCCCCTATGTGGGATGTGATGGTCAGTGGCGAGTTAGTGCCTAATTTGATCATGTACAATGCCATGATTGGGTTGCTCTGCAACAATGCTGTTGTTGATCACGCGTTTCGCTTGCTCGATGAGATGGCATTCCATGGTGCTTTTCCGGACTCCCTCACCTACAACATGATCTTTGAGTGCTTGGTGAAGAACAAGAAGGCACGCGAGACGGAGAGGTTCTTCGCCGAGATGATCAAGAATGAGTGGCCACCCACGGGCTCTAACTGCGCTGCTGCCATCGCAATGTTGTTTGATTGTGATGACCCAGAAGCAGCACATGAAATTTGGAATTATGTTGTTGAGAATCGTGTCAAGCCGCTTGACGAGAGTGCGAATGCGATGTTAGTTGGTCTTTGTAACATGAGTAGATTCTCAGAGGTGAAGAGGCTAGCAGAGGATGTGCTTGATCGAAGGATCAAGGTGTATGAATCGACAATGACGTTACTGAAGGATGCCTTCTATAGAGAAGGTAGAAGTTCAAGAGACAGATATGATAGTCTTTATAGGAAGTGGAAAGCTCATGTCCAGTTGTAA 1641 0.5241 MYHRFTPHTIESAHKNLPLLHYSAELSSLRRVSELNHPFDAPPRTHRFMNRQMEAVAENPARSRGLKYPPSINPNKPQPPPIPKPNQFPSHIDAPNVSSTARALCDILTRTSPHDIETALSSSGIVPEEDLVNEVLKLSYNYPSSAVKFFRWAGRGKKHPAHTWNLMVDLLGKNQLFEPMWDAVRSMKQEDKLSLSTFASVFQSYCAAGRFNEAFMSFDVMDRYGVKQDVVALNSLLSAICTEDNQTSAGLEFLERIKGKVSPDGDTFAILLEGWQKEGNAAKAKITFGDMVAQVGWDKDNVAAYDAFFMTLFHADLMDDVVRFLQVMKDHDCFPGLKFFTNALDALVKRNDAHHAAPMWDVMVSGELVPNLIMYNAMIGLLCNNAVVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKKARETERFFAEMIKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWNYVVENRVKPLDESANAMLVGLCNMSRFSEVKRLAEDVLDRRIKVYESTMTLLKDAFYREGRSSRDRYDSLYRKWKAHVQL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03619 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Spst3g03619 546 Pfam Pentatricopeptide repeat domain 219 273 IPR002885 -
Spst3g03619 546 MobiDBLite consensus disorder prediction 57 87 - -
Spst3g03619 546 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 527 - -
Spst3g03619 546 Gene3D Tetratricopeptide repeat domain 118 298 IPR011990 GO:0005515
Spst3g03619 546 Gene3D Tetratricopeptide repeat domain 340 544 IPR011990 GO:0005515
Spst3g03619 546 MobiDBLite consensus disorder prediction 72 87 - -
Spst3g03619 546 Pfam PPR repeat family 370 419 IPR002885 -
Spst3g03619 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Spst3g03619 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Spst3g03619 546 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Spst3g03619 546 NCBIfam pentatricopeptide repeat 409 441 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03619 Spst-Chr3 86281751 86283537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03619 220 530 Miscellaneous Gene Families AT4G11690 19.808 5.70e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03619 - - gmx:100796114 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03619 3 86281751 86283537 Spst3g03619 3 86281751 86283537 ECH