Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03465 ATGCCGCCGGCTGTAGTGGATCCGCCATTATCGGAAACGTCGTCGGTGCTGTCTTTTACCTCCGACACTGTTTTTCCGGTCACGGCGCCGGAGAATCGGCGATTCGGGGATCTTAGAGGTCTGCAGTGGCGAATAAATCTTGGGGTGTTGCCATCTTCTTCCATTGATGATCTTCGTCGTGCCACAGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTTCTGGTTGATCCACATATTGTAAAGGATGGAAATAGTTCCCCCAATGTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAAGATGGTGGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACCCCCGGATGCCAAGGAATACTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTACAGACAAGGAATGCATGAATTACTTGCTCCAATCCTTTATGTACTCCAATGTGATGTGGAGTGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCCTTTGTCAAGAGAATGATCTTTCTTATAACTTTGATTTTAGAAAATCTTCAGATTTGATGGAGGATGGAATTGACTCCAATGGAAATGTAATGAAAATCAAGAGTCTTGATGAGCTTGACCCTAAGATACAGAACATTGTATTGCTAAGTGATGCATACGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAATGGGGCTCGTGGTTCAATTGCAATGACCGATTTCTTCTCTTATTCTCCTTTGCCTGGGTCACATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCGTTTGTTGTCTCATGCTGATTCATCTCTGCATGACCATCTTGTCGATCTTGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCAGCAACCTTTTAATAATCTGGGATGAAATCTTTTCATCAGATAATAGCGAAGTAGAAAAACACGCTGAGGGCAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCCCGTGGGGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCGCTTCTTGCCGCTGAAAATCCTACAACCTGTCTTCAGAGATTATTAAACTTTCCTGAGAACACTGATATTGAAAAGCTAATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTAAGATTTCATCCTCGACACCTTCATTTGTGGAGCATCATAACCAGCCACCGAAACCAGTTATGGCAAGATCTCTAACTCTTCCATCTGAACCATTTTCTCCGAAAACTCCTCTGAATTTGGTACCTGAGAGCTACTGGGAAGAAAAGTGGAGAGTTGTACACAAGGCTGAAGAACTCAAACAAGATGCAGGAGAAAAACAGGTTCCAATGCGAAAGAAGGGATGGACAGAGAAGGTAAAGTTCAGTTTGAAAAGAAGAGATTCTGACCCCTCTTCACCAAGGTCTAAGAGTGGTAAAAACGAATCCAAGTCACCATTTGGGCGCAGTTTGCTAGAAGATCTTGCTAAGGAACTTGGCTTTGAGAAAGATACTGAAAAACTCTGCAATCATGATAATCTGCCTGCAAAAGTTGAAGAGGAGCAGCGGGAAGACAGTTCCGAATGCAGCAACAATTATTATCCTGAAGATAGATGTCTAAGCCAAAACACTAGTGTTGAAAACTCACCAGATATTTCTTGCCCAGCTAGCCCTCCTAACGAGGCCAATGATCACAAATATGAGTGTGAGAAGAGTAGTGTTGGGTCTAATTTATCCCTTGATGGAATTAATGAAGCTTCCGTTAGTAGTCCCGTTGATTCACCTCTTCCAATCTCTGATCATCCTCAGAACGTATCAAATACAACAGGGAGCAATAATATTAATAATTCCGCTAGAAATTCAGCCACGCATTCCAAGGAGAGAAAAGTGACCAAATTTCAGTGGTTATGGAAGTTTGGGCGGAGTAATGGCGAGTTTATTTCTGAGAAAGGAAGTGATGCTTCTGAGGCAGTAAAACCTGCCAACAACGGCGATAATAAAAGCAATACAATACCCTCTTCTACAGCCAATGGACATTGTAGTTCTCTTAGCTGCAAAGGGGAATCTACAGAGCAGAATGTGACCGGCACTATGAGGAATATTGGGCAGTCAATGCTTGAACATATCCAGGTAATAGAGAGTGCTTTCCAACAGCTGGGCGAGGGAGCATCATTGGATAGCATGTCTAAAAATGATGTGGTTGGCGAAGGGCAGGTTACTGTCATGTCAGCTTTGAAGGAACTACGTAAAATTAGCAATCTTTTGTCTGAGATGTGA 2481 0.4272 MPPAVVDPPLSETSSVLSFTSDTVFPVTAPENRRFGDLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRLLVDPHIVKDGNSSPNVVMDNPLSQNPDSTWSRFFRNAEMEKMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPILYVLQCDVECLSEVRKLYEDHFTDRFDDLLCQENDLSYNFDFRKSSDLMEDGIDSNGNVMKIKSLDELDPKIQNIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSIAMTDFFSYSPLPGSHTGLPPVIEASAALYRLLSHADSSLHDHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSEVEKHAEGNADSGFRIFNSSRGAFISAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENTDIEKLIEKAKSLQALALSTKISSSTPSFVEHHNQPPKPVMARSLTLPSEPFSPKTPLNLVPESYWEEKWRVVHKAEELKQDAGEKQVPMRKKGWTEKVKFSLKRRDSDPSSPRSKSGKNESKSPFGRSLLEDLAKELGFEKDTEKLCNHDNLPAKVEEEQREDSSECSNNYYPEDRCLSQNTSVENSPDISCPASPPNEANDHKYECEKSSVGSNLSLDGINEASVSSPVDSPLPISDHPQNVSNTTGSNNINNSARNSATHSKERKVTKFQWLWKFGRSNGEFISEKGSDASEAVKPANNGDNKSNTIPSSTANGHCSSLSCKGESTEQNVTGTMRNIGQSMLEHIQVIESAFQQLGEGASLDSMSKNDVVGEGQVTVMSALKELRKISNLLSEM 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03465 826 MobiDBLite consensus disorder prediction 580 599 - -
Spst3g03465 826 FunFam TBC1 domain family member 5 98 210 - -
Spst3g03465 826 Gene3D - 307 451 - -
Spst3g03465 826 MobiDBLite consensus disorder prediction 600 624 - -
Spst3g03465 826 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 439 - -
Spst3g03465 826 MobiDBLite consensus disorder prediction 719 748 - -
Spst3g03465 826 MobiDBLite consensus disorder prediction 640 689 - -
Spst3g03465 826 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 443 IPR035969 -
Spst3g03465 826 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Spst3g03465 826 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
Spst3g03465 826 MobiDBLite consensus disorder prediction 727 748 - -
Spst3g03465 826 MobiDBLite consensus disorder prediction 511 545 - -
Spst3g03465 826 FunFam TBC1 domain family member 5 307 451 - -
Spst3g03465 826 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Spst3g03465 826 MobiDBLite consensus disorder prediction 580 694 - -
Spst3g03465 826 Pfam Rab-GTPase-TBC domain 116 197 IPR000195 -
Spst3g03465 826 Pfam Rab-GTPase-TBC domain 268 366 IPR000195 -
Spst3g03465 826 SMART tbc_4 30 414 IPR000195 -
Spst3g03465 826 MobiDBLite consensus disorder prediction 511 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03465 Spst-Chr3 84411029 84416554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03465 K18469 - gmx:100816501 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03465 3 84411029 84416554 Spst3g03465 3 84411029 84416554 ECH
Spst3g03465 3 84411029 84416554 Spst9g02926 9 63357740 63360904 PCT