LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03421	ATGGCAAGTAAGATTTTTCTTGCCCTTCTTTTCATAACCTATGTGGTTGCGGCCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACAATGGAGAACTTCTTACTTTGTCCCTGGACAAGGCCTCTGGCTCTGGATTTCGTTCTAGGAATGAATACTTGTTTGGAAAAATTGACATGCAGCTAAAGCTTGTACCTGGCAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGGGATGTTCATGATGAAATAGATTTTGAATTTCTGGGTAACTTGAGTGGTGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGTAACAGGGAACAGCAGTTCTATCTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATATTATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATCTTGAATCAAAAGGGGTTTCTTTTCCCAAAAACCAAGCCATGAGGATATATTCAAGCCTTTGGAATGCTGATGATTGGGCCACAAGGGGAGGCCTAGTGAAGACTGATTGGAGCCAAGCTCCATTCACAGCCTCTTACAGGAACTTCAATGCCCAAGCATGTGTCTGGACTTCCTCAGGCTCATCTTGTTCATCCAACAATCCATCATCAAACCAATCATGGATGAAGCAATCACTGGATGCAACAGGGCAAGCCAGAATTCAGTGGGTGCAAAAGAACTACATGATTTACAACTACTGTACTGATACCAAGCGTTTCCCACAGGGCCTTCCTCCTGAATGCACAATCGCATGA	849	0.4393	MASKIFLALLFITYVVAASAGNFNQDFEITWGDGRAKILNNGELLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDVHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSILFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSGSSCSSNNPSSNQSWMKQSLDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03421	282	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Spst3g03421	282	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Spst3g03421	282	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Spst3g03421	282	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Spst3g03421	282	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	281	IPR013320	-
	Spst3g03421	282	CDD	GH16_XET	18	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Spst3g03421	282	Gene3D	-	9	281	-	-
	Spst3g03421	282	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	235	279	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Spst3g03421	282	PIRSF	EndGlu_transf	1	282	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Spst3g03421	282	Pfam	Glycosyl hydrolases family 16	24	203	IPR000757	GO:0004553\|GO:0005975
	Spst3g03421	282	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	17	279	IPR044791	GO:0004553
	Spst3g03421	282	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Spst3g03421	282	FunFam	Xyloglucan endotransglucosylase/hydrolase	10	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03421	Spst-Chr3	84000199	84001587	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03421	3	282	Glycoside Hydrolase	AT4G25810	73.310	8.04e-156	434

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03421	K14504		-	gmx:100807063	545.043

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g03421	3	84000199	84001587	Spst9g02885	9	62987791	62989060	PCT