Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02977 ATGACCATCGACTTGGATTCCGTCGCTCGCAAAGTCGACGTTGATAATCGCATTCCCCTCCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAAGTATCTACAGGGAGGAGAATAACGTAGTTGACTTGTACATCATTCTCCTTAGATTTTCAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTACACTGCCCAATGAAAGAGCAGCTAATAAGAAGAGATCACGAGCCGTATTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGGTCAAAAAATTGAAAGACTTGCATGTTAAAGCTCCATTGCCTGAGGAAAATGGCTGCAATAAGGCTTTGCAGAGTTCAGTAAATTCATCTTTGGAATGGTCGGCTGTCAATAAAAGTAATAACTTGAGCATGGATTTTAAACAGACTGCTGGATTCGGGTCACACTCGTCATGGAATTATAATAATATGTTCTCATCAGATTCCAGGCCTATTGACAAGCACTTTCAGAAACTATCTCTTAGTCTACCTGCTCCAAATAAGGAGACTTTGTCTAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGCGCAGAAATAAAGGTTCAATATCCAAGCAGTAGTGACCTCACACATGCCAAGGATTCAAGCCTGCATCAGACTGGGCTATATGACATTGTGGCAATTAAAGATGATGATCAAGAACCAGTTGTATCCACAATGGAGTCAGTTCTCTCCTTGGATGATGGAAGATGGTTGCGTCCTTCTATTGAGTCCAGTTCTTCTGTTGAAACTGAAACAAGGGAGGACCCCTTACAATTTCTCAACATCAGGCAACCTATGCCCCCTCCTGTTCTTGCACAGGTGCACCCGGAATGTGCCCATATTCCCCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCTTCTCATGATTCTGGACTTGATACAACAACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCACAAAACACTATGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCTTGAAAAAAAGGGTATTCCATATCACGACACTTATAATCCCAAAGCAGGAATCAACTTCGGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGATTATCACTTTTTCCTCTAGGTTGGATACATACACATCCGTCACAAACTTGTTTCATGTCTTCTGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCTGAAGCAATTGCTATTGTCATGGCCCCTACGGATACTACTAGTCCACATGGCATATTTCATTTGTCTGATCCAGGAGGTGTTTCTGTAATTCGAAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTTCGGATGGAAGTCCAATATATGAGCACTGCTCTCACGTCTATATGAACGCCAACTTGAAGTTCGATGTTGTTGACCTTCGAAAGCGATGA 1539 0.4217 MTIDLDSVARKVDVDNRIPLRYYYRIADNLLKQASIYREENNVVDLYIILLRFSSLVSETIPYHRDYQATLPNERAANKKRSRAVLDELESLKPEFKRRVKKLKDLHVKAPLPEENGCNKALQSSVNSSLEWSAVNKSNNLSMDFKQTAGFGSHSSWNYNNMFSSDSRPIDKHFQKLSLSLPAPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHAKDSSLHQTGLYDIVAIKDDDQEPVVSTMESVLSLDDGRWLRPSIESSSSVETETREDPLQFLNIRQPMPPPVLAQVHPECAHIPPSKVADPRPGPAKSSHDSGLDTTTYQHLHIPVKMMEDFLRLASQNTMKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRKR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02977 512 FunFam AMSH-like ubiquitin thioesterase 3 1 116 - -
Spst3g02977 512 Gene3D Cytidine Deaminase, domain 2 320 512 - -
Spst3g02977 512 FunFam AMSH-like ubiquitin thioesterase 3 321 512 - -
Spst3g02977 512 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Spst3g02977 512 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Spst3g02977 512 PANTHER AMSH-LIKE PROTEASE 3 510 - -
Spst3g02977 512 SUPERFAMILY JAB1/MPN domain 335 466 - -
Spst3g02977 512 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst3g02977 512 CDD MPN_AMSH_like 333 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Spst3g02977 512 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst3g02977 512 Coils Coil 86 106 - -
Spst3g02977 512 SUPERFAMILY USP8 N-terminal domain-like 4 113 - -
Spst3g02977 512 Gene3D - 2 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02977 Spst-Chr3 79445117 79451549 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02977 K11866 - gmx:100812784 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02977 3 79445117 79451549 Spst3g02977 3 79445117 79451549 ECH