Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02952 ATGAACGCACTCCCTTCCTCTTCCTCTTCCACCTTCGCTTTCGTAACTCAGTCCAAGAACCCTACTTATCTCTTCAAGTTCACACCTAAAGTACCCATTTTACCCCTACACTCACATGCACCGTGTTGCTCTGTCAGCGACTCATCCTCGTCGGCCACTGTGCTGGACAAAAATGCTCCCTCATCGGAACAGAATTCCCGCAATGCGTATTCGTCCGAAGGATCGGGCTCCGAGGAAGCCCTTGTTGTTCGCCGGCCGGTGACGTATTTTCCCGGCGCGGAGGAAGAAGAGAAGGAGGCGGAGGAGGAGGAAGAGAAGGAGGCGGAGGACAGTGTTGACGCGAAGGCCTCGGCGATCGACGCCGGGCTCGCGAGGTTCGCGAAGAACATGCCTATATTTGAACCTGAGAGGGTGGAGTCGAAAGAGAGACCCCTGGCAGTGAATTTGGACTTGGCGTTATACAGGGCGAAGCTTATGGCTAGAAGAAGCTTTCGGTATAAAGAAGCAGAGGCGTTGCTTCAGAAGTGTATAAGCTTATGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGCAAGATTTTGAGCAAGCAATCGAAAACAGGTGAAGCCAGAGAGGTATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATTTCAGGAGAGCAAGAGAGTTTTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGACTCTACTCGGTAAAGGCCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAATAGATATCAGCAGGCTCGTTATTTATTCAATCAGGCCACCAAGTGCAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCACAAATGGAGGTGGAACGGGAAAACTATCGTGCTGCTAGGAAGTTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCCTTTTTGAAGCAAACATGGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGTCACAATCTAAATCCGAGGGATCCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCATCAGAATTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATACAGCCAGAGAATTATACCAAAAAACTTTATCAATTGATCAAAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTATGGAGCACAGGGTTGGCAATCCTTCAGCTGCTCGTAGATTATTTAAATCCTCGTTGAATATAAATTCCCAGAGTTATGTGACGTGGATGACTTGGGCATCAATGGAGGAAGAACAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGCTATGGGATTCTTAGATATTTTAGATCCGGCCATTGACAGTTTAAAGACGCTCCTCAAGCTGAACCCAAATTCTTACAACACGCCATCTAATTCTTTGAGAAGTATCGCGGGAACAGATAAAAACAAGGTCGATTTTTCTAGTAACGACAATGATGAGGATGATGCAAATGGTGAAAGTGACTTCGATTTGGATGCTTTCATTATAAAAAGGCTATTCTTAGATCCGTCCAATCTAGAAGTTCAGTTGGAAGCGCCCAAAATTTCCTCCGTGAAGAGAAGTCCATCTGGTAGAAGGATATGGCGACCAAATAATCGAATTGCTAGAGTGCAAGTCCAAAGTAACGTTCTTTAG 1953 0.4572 MNALPSSSSSTFAFVTQSKNPTYLFKFTPKVPILPLHSHAPCCSVSDSSSSATVLDKNAPSSEQNSRNAYSSEGSGSEEALVVRRPVTYFPGAEEEEKEAEEEEEKEAEDSVDAKASAIDAGLARFAKNMPIFEPERVESKERPLAVNLDLALYRAKLMARRSFRYKEAEALLQKCISLWPEDGRPYVVLGKILSKQSKTGEAREVYEKGCQATQGENAYIWQCWAVLEMQMGNFRRAREFFDAATVADKKHVAAWHGWAVLELKQGNIKKARTLLGKGLQYCGQNEYIYQTLALLEARANRYQQARYLFNQATKCNPNSCASWLSWAQMEVERENYRAARKLFEKAVQASPKNRFAWHVWGLFEANMGNIDKGRKLLKIGHNLNPRDPVLLQSLALLEYQHSTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNMNTARELYQKTLSIDQNSETAARCLQAWGVMEHRVGNPSAARRLFKSSLNINSQSYVTWMTWASMEEEQGNSVRAEEIRNLYFQQRTEVVDDASWAMGFLDILDPAIDSLKTLLKLNPNSYNTPSNSLRSIAGTDKNKVDFSSNDNDEDDANGESDFDLDAFIIKRLFLDPSNLEVQLEAPKISSVKRSPSGRRIWRPNNRIARVQVQSNVL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02952 650 Coils Coil 93 113 - -
Spst3g02952 650 SUPERFAMILY TPR-like 375 561 IPR011990 GO:0005515
Spst3g02952 650 MobiDBLite consensus disorder prediction 562 577 - -
Spst3g02952 650 Gene3D Tetratricopeptide repeat domain 218 561 IPR011990 GO:0005515
Spst3g02952 650 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 32 640 IPR044624 GO:0003729|GO:0006397
Spst3g02952 650 SUPERFAMILY TPR-like 118 399 IPR011990 GO:0005515
Spst3g02952 650 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Spst3g02952 650 Pfam Tetratricopeptide repeat 228 277 - -
Spst3g02952 650 Pfam Tetratricopeptide repeat 293 354 - -
Spst3g02952 650 MobiDBLite consensus disorder prediction 47 78 - -
Spst3g02952 650 SMART tpr_5 389 422 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 253 286 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 219 252 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 355 388 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 321 354 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 287 320 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 184 217 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 460 493 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 150 183 IPR019734 GO:0005515
Spst3g02952 650 SMART tpr_5 423 456 IPR019734 GO:0005515
Spst3g02952 650 FunFam Uncharacterized protein 134 391 - -
Spst3g02952 650 SMART hat_new_1 267 299 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 198 231 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 335 367 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 474 506 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 233 265 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 369 401 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 301 333 IPR003107 GO:0006396
Spst3g02952 650 SMART hat_new_1 403 435 IPR003107 GO:0006396
Spst3g02952 650 MobiDBLite consensus disorder prediction 92 114 - -
Spst3g02952 650 MobiDBLite consensus disorder prediction 95 109 - -
Spst3g02952 650 FunFam PsbB mRNA maturation factor Mbb1 392 540 - -
Spst3g02952 650 Gene3D Tetratricopeptide repeat domain 148 217 IPR011990 GO:0005515
Spst3g02952 650 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Spst3g02952 650 MobiDBLite consensus disorder prediction 562 591 - -
Spst3g02952 650 MobiDBLite consensus disorder prediction 47 75 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02952 - - vun:114175850 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02952 3 79197373 79201954 Spst3g02952 3 79197373 79201954 ECH