Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02942 ATGGGTTCCTTCTCAGTTGAGAAACAGAGATCCAAGCAACCCATGGAAAGGAAAACGACGAAAGGGTTCGAGCGTTTCGATGTTGTGACGGACGACAGAGACCATCGTTTTCGAGATTCGAATGATGGGAAGAGCTTCAACGATGGAAGCAGTGAACTTTACAAAACGATCATGAGAGAGTGGAAGATTCTGGAGAAGAACTTGCCGGAATCAATCTACGTCAGGGTGTACGAGCAACGCATTGATCTAATGAGGGCTGTAATCGTAGGCGCCGTGGGCACACCCTACCACGATGGTATCTTCTTCTTCGACATCGTGTTCCCTGCGAATTACCCGAAGCACCCTCCGAAGCTGTATTACCACTCCTTCGGGTACAGACTGAACCCTAATCTGTACAATAACGGAAAAGTGTGCTTGAGCCTGCTGAACACGTGGCACGGGAGAAAGAGAGAGAAGTGGGACCCAAGCGAGTCGACGATGCTGCAGGTTTTGCTCTCGATCCAAGCCCTTGTTCTGAACGAGAAGCCGTTTTTCAACGAGCCTGGTGTCGACAAGGGTTTGGGTCGTTTCGGCTTGAGCTTGGAGAAGAAGTCACGTGTGTACAACGAGGGTGCGTATTTTACTACTTGCAGAACCTCGTACCAACTGCTTCGGAGGCCGCCTCGGAACTTCGAAGAGTTCGTGAGTGGCCACTTTCGCGAGAGAGCGAGTCGCATAATCGACGCTGGAAGGCAGTACGCGAGTGGGCACGTGAGGATCGGGTACTACTCGTGCGAGTCGGCTCCGTCGTCTTCATCGGGGGTGGTCGTTTCGCCTGAATTCAAGGTCAGGATAAAGGAGTTTTTCCCACTGTTTGTTCGCGCGCTTCGACAGAACGAGAACGGTGCTCCTGTGGACGGTGTTGATTTGCGATGTACGACGAACTTCGTGGTCACGGCATGGAATGACACCGATGGCGATTGGATGGAGGATCCCGAAAACAAAGGTGGTGGATTCTTCAAAACGATGATGGATAAGATCAAACAGTCTTTTGGATGGAAGAACATTGGAAACAATAATAGTAGCTAG 1068 0.5075 MGSFSVEKQRSKQPMERKTTKGFERFDVVTDDRDHRFRDSNDGKSFNDGSSELYKTIMREWKILEKNLPESIYVRVYEQRIDLMRAVIVGAVGTPYHDGIFFFDIVFPANYPKHPPKLYYHSFGYRLNPNLYNNGKVCLSLLNTWHGRKREKWDPSESTMLQVLLSIQALVLNEKPFFNEPGVDKGLGRFGLSLEKKSRVYNEGAYFTTCRTSYQLLRRPPRNFEEFVSGHFRERASRIIDAGRQYASGHVRIGYYSCESAPSSSSGVVVSPEFKVRIKEFFPLFVRALRQNENGAPVDGVDLRCTTNFVVTAWNDTDGDWMEDPENKGGGFFKTMMDKIKQSFGWKNIGNNNSS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02942 355 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 52 214 IPR000608 -
Spst3g02942 355 CDD UBCc 54 181 IPR000608 -
Spst3g02942 355 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 12 291 - -
Spst3g02942 355 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g02942 355 Gene3D Ubiquitin Conjugating Enzyme 9 270 IPR016135 -
Spst3g02942 355 FunFam Putative ubiquitin-conjugating enzyme E2 38 14 292 - -
Spst3g02942 355 SUPERFAMILY UBC-like 45 221 IPR016135 -
Spst3g02942 355 SMART ubc_7 55 214 - -
Spst3g02942 355 Pfam Ubiquitin-conjugating enzyme 57 176 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02942 Spst-Chr3 79093977 79095044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02942 23 291 Miscellaneous Gene Families AT2G33770 47.955 8.82e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02942 K10581 - gmx:100791343 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02942 3 79093977 79095044 Spst3g02942 3 79093977 79095044 ECH