Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02938 ATGTGCCCTTCCGGTCGCATCCTCAGCCCCCAAGCTGCTGCCATCGCTGATTTCCGCCCCGCATTCGATGTTCTCGACGCCGACCGCGATGGCAAGATAAGCCGCGACGACCTCCGCGCATTTTATACCGGCGTACGTGGCGGAGTCGACGGCGGAGATGAGTTGATCGGCGCAATGATGACGGTGGCCGACACAAACAAGAACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTGGCAGGAAACGCAGAGATAAAACCCATGGGTAGTGGGGCCATGGAGGACGTGTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCGCGACCTCAAGACTTACATGGCCTGGGCGGGCTTCCCGGCCACCGACGAAGACATCAACGCCATGATTCGCTTCGGCGACGGCGACAAAAATGGCGGTGTTACCTTCGATGGTTTGCTTCGTATTTTAGCGCTTGATTCGGCCGCCGTGAATTAA 489 0.591 MCPSGRILSPQAAAIADFRPAFDVLDADRDGKISRDDLRAFYTGVRGGVDGGDELIGAMMTVADTNKNGFVEYEEFERVVAGNAEIKPMGSGAMEDVFRVMDKDGDGKLSHRDLKTYMAWAGFPATDEDINAMIRFGDGDKNGGVTFDGLLRILALDSAAVN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02938 162 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Spst3g02938 162 SUPERFAMILY EF-hand 15 154 IPR011992 -
Spst3g02938 162 Pfam EF-hand domain pair 18 79 IPR002048 GO:0005509
Spst3g02938 162 Gene3D - 8 159 - -
Spst3g02938 162 ProSiteProfiles EF-hand calcium-binding domain profile. 13 48 IPR002048 GO:0005509
Spst3g02938 162 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Spst3g02938 162 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Spst3g02938 162 SMART efh_1 17 45 IPR002048 GO:0005509
Spst3g02938 162 SMART efh_1 55 83 IPR002048 GO:0005509
Spst3g02938 162 SMART efh_1 129 157 IPR002048 GO:0005509
Spst3g02938 162 SMART efh_1 93 121 IPR002048 GO:0005509
Spst3g02938 162 PANTHER CALCIUM BINDING PROTEIN 94 151 - -
Spst3g02938 162 CDD EFh 95 155 IPR002048 GO:0005509
Spst3g02938 162 CDD EFh 17 81 IPR002048 GO:0005509
Spst3g02938 162 ProSitePatterns EF-hand calcium-binding domain. 26 38 IPR018247 -
Spst3g02938 162 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Spst3g02938 162 FunFam Calcium-binding protein CP1 11 80 - -
Spst3g02938 162 Pfam EF hand 94 116 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02938 Spst-Chr3 79041577 79042065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02938 1 154 EF-hand Containing Proteins AT5G49480 53.704 1.79e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02938 K02183 - gmx:100527230 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02938 3 79041577 79042065 Spst3g02938 3 79041577 79042065 ECH